Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0536 ATGGGTTCCAGCGAGTTGGCATGCTCCTACGCCACCTTGATCCTACACGACGAGGAAATCGGAATCACCGCGGAGAAGATTACCACGTTGTTGAAGGCTGCTAACGTGAACGTTGAATCATACTGGCCAAGTTTATTTGCTAAGCTTGCTCAGAAGAGGAATATTGATGACCTCATCTTGAACTCCGGTGGAGGAGGCGCTGCTGCTGTTGCCGTCGCTGCCCCTGCTGCCGCTGGTGGTGGTGCTGCCGCCGCAGCTCCAGCTGTTGAGGAGAAGAAGGAGGAGGCCAAGGAAGAAAGTGACGATGACATGGGATTCAGCTTGTTTGATTAG 333 0.5345 MGSSELACSYATLILHDEEIGITAEKITTLLKAANVNVESYWPSLFAKLAQKRNIDDLILNSGGGGAAAVAVAAPAAAGGGAAAAAPAVEEKKEEAKEESDDDMGFSLFD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0536 110 MobiDBLite consensus disorder prediction 88 104 - -
Lal4g0536 110 MobiDBLite consensus disorder prediction 84 110 - -
Lal4g0536 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 110 - -
Lal4g0536 110 Pfam 60s Acidic ribosomal protein 22 109 - -
Lal4g0536 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Lal4g0536 110 CDD Ribosomal_P1 5 61 - -
Lal4g0536 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lal4g0536 110 Gene3D - 2 63 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0536 Lal-Chr4 3897580 3899713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0536 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.407 4.16e-40 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0536 K02942 - rcu:8269526 121.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0611 17 4377794 4379733 Lal4g0536 4 3897580 3899713 ECH
Lal3g1532 3 21028810 21030240 Lal4g0536 4 3897580 3899713 ECH
Lal4g0536 4 3897580 3899713 Lal4g0536 4 3897580 3899713 ECH