Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0535 ATGGAGGGGCCGTCTATGCCGTTTGAATTCAATGCAGAAGTGACCACTACCCCATTTGATGAAAACGATTTATCAATTTACCAATCCCTCGCACAAGATAATACTGGAGATTTTTTCAACTTCAAGATTAATGTTAGGGATCGAATTATCTGTTTAACTCGGGAAGAACTACAACAACCACTTTCAAGAACACCTTATTATTTTGAGTCTTCATATGAAATCATCATTCTTCTTCCATGTCCACAGTTCTTGGAAAGTGGTTTAGTTTCAGTCTTCCCTGACAATATCGTTCCACCTGCGTTGTTGCACGCAATTGCACCAACTGTGATGACATTTGCCACAGATCTGTGTGAAAGTAGTGGAGAAACTATTCCTTGTCGTATGTATAATTTGGTTCTTAATATTGTGGTTGTGAAACTATACGATGATGTTGTCGATACGATGATGGAGGAGTCCGCGAGAGAAGTTAGAACTGTTCCTGCATCAAAGGCTGCGATTGAATCACTCAAGAAAGTGAATCTTGAAAAGGGTATGAGCAGAGAAAGTTGTAGTATTTGTTTGGAGGAGTTTAATGGGGAAGAGGAGGTTTTAGCAATGCCATGCAAACACATGTATCATCAAGAATGCATCTTCCACTGGCTTCAAAGGTGTGACACATGCCCCTTGTGTCGCTACTCCATGAACAAAAGCAGCACCTGA 699 0.4063 MEGPSMPFEFNAEVTTTPFDENDLSIYQSLAQDNTGDFFNFKINVRDRIICLTREELQQPLSRTPYYFESSYEIIILLPCPQFLESGLVSVFPDNIVPPALLHAIAPTVMTFATDLCESSGETIPCRMYNLVLNIVVVKLYDDVVDTMMEESAREVRTVPASKAAIESLKKVNLEKGMSRESCSICLEEFNGEEEVLAMPCKHMYHQECIFHWLQRCDTCPLCRYSMNKSST 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0535 232 SUPERFAMILY RING/U-box 182 228 - -
Lal4g0535 232 SMART ring_2 183 223 IPR001841 -
Lal4g0535 232 PANTHER F6A14.12 PROTEIN-RELATED 110 227 - -
Lal4g0535 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 230 IPR013083 -
Lal4g0535 232 Pfam Ring finger domain 182 224 IPR001841 -
Lal4g0535 232 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Lal4g0535 232 CDD RING-H2_PA-TM-RING 183 224 - -
Lal4g0535 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 110 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0535 Lal-Chr4 3895455 3896153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0535 153 227 C3H Transcription Factor Family AT1G26800 48.000 2.67e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0535 - - lang:109327711 231.876