LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal4g0534	ATGGCGGTTGTTGAGAATGTTGGAACCAAAATCGATTCTTCAAGTCAAAATTTGGACAACAGCGTTGATTCATCTGAAACCACTGAGGTGGAGGAATCAAAACCCATAAATGGTTCCATCATCGGTGATCAGAATCTGAATGGTGTGTATAACCATCATGATAATGTTCCCAATACTATTTCAGTCCCAAACAGTAACTACAAGGTTCAAATGGGTCAGGTGGGAAATGGGGTCCAGAATCACCAAAGGGTGTTGAACAATAATGGGTATGGTGGAGTTAATGTGGAGAATGGGGGTGAGAGTTTCAAGAAGGATATGAGGGATTTGGAGGAATTTTTGTCAAAGTTGAATCCCATGGCTGAGGAGTTTGTGCCTCCATCACTAACAAACAATTTTGGTTACTTAGCTGGACCTGATGCTGCTGGGTTTGGGTACCCTAACAATTTTTTATTCCCCAACAATTATGGGAATGTTAATGGACAAAATAACAGAAGGAGAAAGAATGGCTATAATCAGGGGAAGCGAAGAGTCAATAATAAAGTAGATATGGAGGGAACAGAAGAGATGGTTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACGGAAGAGCAACTGGCAGCTCTCTTTCTTAACTGTGGGCAGGTTGTTGATTGCCGTGTTTGTGGGGACCCTAATTCCATTCTCCGGTTTGCTTTCGTTGAGTTTACGGATAAGGAAGGTGCAAGGGCTGCTTTGAGCCTGTCTGGAACCATGCTTGGGTATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCAACATATTTGCCCAGGTCCGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACAATTCTTCGAATCTATCTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCAGCACTCTACTCGAATTGCATTTGTCGAGTTTACGGTGGCCGAAAGTGCAATTGCTGCTCTGAACTGTAGTGGTGTGATTTTGGGTTCAATGCCTATAAGGGTTAGTCCATCCAAGACACCGGTTCGAGCTCGTGTTGCACGTACTTCTATGCATTAA	1134	0.4321	MAVVENVGTKIDSSSQNLDNSVDSSETTEVEESKPINGSIIGDQNLNGVYNHHDNVPNTISVPNSNYKVQMGQVGNGVQNHQRVLNNNGYGGVNVENGGESFKKDMRDLEEFLSKLNPMAEEFVPPSLTNNFGYLAGPDAAGFGYPNNFLFPNNYGNVNGQNNRRRKNGYNQGKRRVNNKVDMEGTEEMVRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDKEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKLTQADVKQFFESICGEVQRLRLLGDYQHSTRIAFVEFTVAESAIAALNCSGVILGSMPIRVSPSKTPVRARVARTSMH	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal4g0534	377	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	291	358	IPR000504	GO:0003723
	Lal4g0534	377	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	194	257	IPR000504	GO:0003723
	Lal4g0534	377	MobiDBLite	consensus disorder prediction	8	24	-	-
	Lal4g0534	377	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	289	365	IPR000504	GO:0003723
	Lal4g0534	377	CDD	RRM2_CID8_like	285	366	IPR034825	-
	Lal4g0534	377	Gene3D	-	274	372	IPR012677	-
	Lal4g0534	377	Gene3D	-	153	269	IPR012677	-
	Lal4g0534	377	CDD	RRM1_CID8_like	190	269	IPR034823	-
	Lal4g0534	377	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	192	267	IPR000504	GO:0003723
	Lal4g0534	377	SUPERFAMILY	RNA-binding domain, RBD	278	369	IPR035979	GO:0003676
	Lal4g0534	377	SUPERFAMILY	RNA-binding domain, RBD	163	269	IPR035979	GO:0003676
	Lal4g0534	377	SMART	rrm1_1	290	361	IPR000504	GO:0003723
	Lal4g0534	377	SMART	rrm1_1	193	263	IPR000504	GO:0003723
	Lal4g0534	377	MobiDBLite	consensus disorder prediction	1	33	-	-
	Lal4g0534	377	PANTHER	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE	1	377	-	-
	Lal4g0534	377	Pfam	Ataxin-2 C-terminal region	113	127	IPR009818	-
	Lal4g0534	377	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	1	377	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal4g0534	Lal-Chr4	3878675	3883567	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal4g0534	191	360	Eukaryotic Initiation Factors Gene Family	AT1G34140	24.713	1.57e-09	57.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g0608	17	4357089	4362198	Lal4g0534	4	3878675	3883567	ECH
	Lal4g0534	4	3878675	3883567	Lal4g0534	4	3878675	3883567	ECH
	Lal17g0608	17	4357089	4362198	Lal4g0534	4	3878675	3883567	LSH
	Lal21g0593	21	4459816	4464913	Lal4g0534	4	3878675	3883567	LSH