Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0533 ATGGCGGTTGCTGAGAATGTTGGGACCAAAATCGGTTCTTCAAGTCAAAATTTGGACAACAGTGTAGTCTCATCTGACACCACCACTGAGGTAGAGAAATCAAAACCCATAAACGGTTCAATCAACGGTGGTGATCAGAATCTGAACGGTGTTTTCAACCACCATGATAGAGCTCCAAACAGTAACTACAAGGCTCAAATGGGTCAGATTGGAAATGGGTTTGAAGCAAATGGGGTTCAGAACCAGCAGATTGTGGTGAACAATAATGGGTATGGTGGGGTTATTGGAGAGAACGGGGGTGAGAATTTCAAAAGGGATATGAGGGATTTGGAGGAACTTTTATCTAAGCTGAATCCTATGGCTGAAGAATTTGTGCCTCCATCACTAATAACAAAGAATCTTGGTTACTTAGCTGCACCTGGTGCTGGGTTTGGTTACCCTAACAATTTTGTTCTTCCCAACGGTTATGGGAATGTTAATGGGCAAAATAACAGAAGGAGGAAGAATGGCTATAATAACGGGAAGCTGAGAGTCAATAATAAAGCGGATATGGAGAGGAAAGAAGAGATGGTTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGCTTACCGAAGAGCAGCTAGCAGCCCTCTTTCTTAACTGCGGCCAGGTTGTTGATTGTCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTTGCCTTTGTTGAATTTACGGATGAGGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACAATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTCAATCCAACATTTTTGCCAAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTACTGCACTAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATCTGTGGAGAGGTTCAACGTTTGAGGCTTCTTGGAGATTACCAGCATTCTACTCGAATTGCATTTGTTGAGTTCGCAGTGGCCGAGAGTGCAATTGCCGCTCTGAGCTGCAGTGGTGTGATTTTAGGTTCATTGCCTATTAGGGTTAGTCCGTCAAAGACACCAGTCCGGTCTCGTTTCCCTCGCACTTCTATGCACTGA 1137 0.438 MAVAENVGTKIGSSSQNLDNSVVSSDTTTEVEKSKPINGSINGGDQNLNGVFNHHDRAPNSNYKAQMGQIGNGFEANGVQNQQIVVNNNGYGGVIGENGGENFKRDMRDLEELLSKLNPMAEEFVPPSLITKNLGYLAAPGAGFGYPNNFVLPNGYGNVNGQNNRRRKNGYNNGKLRVNNKADMERKEEMVRRTVYVSDIDQLLTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYQHSTRIAFVEFAVAESAIAALSCSGVILGSLPIRVSPSKTPVRSRFPRTSMH 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0533 378 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 378 - -
Lal4g0533 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 359 IPR000504 GO:0003723
Lal4g0533 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 258 IPR000504 GO:0003723
Lal4g0533 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 366 IPR000504 GO:0003723
Lal4g0533 378 SUPERFAMILY RNA-binding domain, RBD 178 269 IPR035979 GO:0003676
Lal4g0533 378 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 378 - -
Lal4g0533 378 SMART rrm1_1 194 264 IPR000504 GO:0003723
Lal4g0533 378 SMART rrm1_1 291 362 IPR000504 GO:0003723
Lal4g0533 378 MobiDBLite consensus disorder prediction 1 45 - -
Lal4g0533 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 268 IPR000504 GO:0003723
Lal4g0533 378 CDD RRM1_CID8_like 191 270 IPR034823 -
Lal4g0533 378 MobiDBLite consensus disorder prediction 8 45 - -
Lal4g0533 378 Gene3D - 154 270 IPR012677 -
Lal4g0533 378 Gene3D - 277 371 IPR012677 -
Lal4g0533 378 CDD RRM2_CID8_like 286 367 IPR034825 -
Lal4g0533 378 SUPERFAMILY RNA-binding domain, RBD 280 372 IPR035979 GO:0003676
Lal4g0533 378 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0533 Lal-Chr4 3871779 3875368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0533 192 361 Eukaryotic Initiation Factors Gene Family AT1G34140 25.862 1.15e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0533 - - gmx:106794116 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0607 17 4347078 4351551 Lal4g0533 4 3871779 3875368 LSH
Lal21g0592 21 4437240 4441210 Lal4g0533 4 3871779 3875368 LSH