Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0532 ATGTCACAGCCAAGGCAAAACAAGATTATGAGTCAAAATGTTTCTACACAAGTTGGTGACACAACATGTACTAAGATCTTTGTTGGAGGGTTGGCTTGGGAGACAAAGAGAGACACTCTCAAACTTTATTTTGATCAGTTTGGGGAAATCTTAGAGGCTGTTGTCATCACTGACAGAAACACTGGAAGATCAAAAGGATATGGCTTTGTAACCTTCAAGGACCAAAATTCTGCAGAAAGAGCTTGCCAGAATCCTTATCCTGTAATTGATGGAAGAAAAGCTAATTGTAATATTGCAGCTCTTGGTACACAAAAATTTGATCTCTCAGCAAGACAGAAATTGAGAAGTCCTTCATGGACTATGGTACCAACCCCACTTCAAGGCACATCCACTTATTATAATCAGCATATACCACAATACACATTTCCATATCCACCATATAGGTATCCAAGTTATCCACCCCCCCAAGGAATCTATGGCATGCAAAACTACCATAATGCATATGGTGGACAGCAACTACCATTTCGGTTGTTACCGGCATATTACCTACCCTTCTATGACCATAGTAGGCAGTTTAATCCAGCAGCATATGTTAAAAAGACACAATTCCATGAAATGACACATCAGGAATTAACAGTTGCTGGCTTATCAGAATCTATTTCAGCTTCTCCTTCAATTTCCAGCACTGGATTAATCACAGGAACAGTAGCTGCTGGAACAGGAGTGCTAGGATCTTCTCCAGAACAAAAACATTCAACTTAA 762 0.3976 MSQPRQNKIMSQNVSTQVGDTTCTKIFVGGLAWETKRDTLKLYFDQFGEILEAVVITDRNTGRSKGYGFVTFKDQNSAERACQNPYPVIDGRKANCNIAALGTQKFDLSARQKLRSPSWTMVPTPLQGTSTYYNQHIPQYTFPYPPYRYPSYPPPQGIYGMQNYHNAYGGQQLPFRLLPAYYLPFYDHSRQFNPAAYVKKTQFHEMTHQELTVAGLSESISASPSISSTGLITGTVAAGTGVLGSSPEQKHST 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0532 253 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 246 - -
Lal4g0532 253 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Lal4g0532 253 Gene3D - 1 111 IPR012677 -
Lal4g0532 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Lal4g0532 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Lal4g0532 253 CDD RRM_RBM24_RBM38_like 24 99 - -
Lal4g0532 253 PANTHER BOULE-RELATED 1 246 IPR037366 GO:0003729
Lal4g0532 253 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0532 Lal-Chr4 3865295 3867510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0532 8 100 C2H2 Transcription Factor Family AT2G19380 37.634 1.21e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0532 - - gmx:100788634 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0606 17 4343726 4345869 Lal4g0532 4 3865295 3867510 LSH