Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0530 ATGAGTCAATTTGGTTTTTCATACAAGGAACTTAATAAAAATAGTGTTACTACTGCTACCACTACTAGTAGTGTTGTTGGGTTGGGTGTGAAGAAGGTGCAGCAGACCCTTGAAGCATTCCCTAGTAATAAGAATAGTGTGATTATGATGTTGCATCATAATCATCACCACCGTCCATTTTCACAACCCTTTGATAGTGATTCTTCTGTAGCTGGTGATGGTGATGGTCCTACTCACACTAATTATATGTCTAATTGGACTAATCATATGAACCTTGTTACAACATCTGGTGCTTATTCTGCTATTGATGGTGCTGGTTCTGTACCTGTAAGAACTTTGCAGCAGCCTTTTGATACTTCTGCTTATTATGCATCTGGTTACCCTGCTTTCAAATCCTCAGATATGATGGCAGCTTCATTGGGGTTTCCTTTCACAAGTGCACAATGGAAAGAGCTTGAAAGACAAGCTATGATTTACAAGTACATGGTGGCTTCTGTTCCTGTTCCTCATGATCTCCTTATCCCAAGTTATTCTCCCTCCACTTTGAATGGTGGTTTCAATTTGAGGTTATCAAGCAATGATCCTGAGCCAGGTAGGTGCAGGAGAACAGATGGTAAGAAATGGAGATGTTCAAGAGATGTAGCACCAAATCACAAATATTGTGAGAGGCATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCACACCAATAACAACCAGAATCAGATCAAAAGGGCTAAACATGATTCTAATCTTTTTCCTACTTCTGATAGCACCACAACCACAAAAGGTGGATCTACTTCTCAGTTTGTTGCTTCTGGTACCAGTCAGCAATACCTTGATTCTTCTTCCCTTTCTCTTCATGATTTTGGTGTCAAAACTAGAAACTTTGACCCTGTTGCTTCTGTTCCTTCAAATAAAGAATCCAGGGGCTTGGAGTGGATGCTGAATGGAGATCCTATTTCCCTTGGTGCTTCTCACTCAGAATTTCAGAATCTGATGCATAACAAAGTTGGCTTGACCACTGAGAGTTCCTTCAATGACACTGAGCCTCAATATCTGAATTCATTTGCACTGTATAATTCTGCTATACTAGATCAACAGAACCAACACCCTCCTATGTTCCTTAATCCTATTGATTTTCCCATGGAAAATCTCCAATCCCAGAAACCAAGAGGTTCCATTGATGCTTGGTCAACAGAACAAAACAATGGTAACACAAACAAGACCAATGTTGGATCAATTGGTAAACTATCCCTTTCTTCTCTAGATCTATCAATGGGAGGTGGTTGTGTGCATGAAGACACAAACACTATTGACATGTGTTTAGGCCTAATGGAGAATGAAAACAACACACAACACAATGATACTAAAACCCATCTCTCAAATTGGCTCACCCCATCATTATCTTCACCACATTGGGTTGCTTCAACAACACTTGGTGGTCCATTAGCTGAAGTTCTAAGACCAAGCACTTTCACTAATGATGCAGCTTCAAATCCATCATCTTCTGTCATAACACATGCTGAATCTAGCAGCAGCCATTTGGGAACATTGGTTTCATCCCCTTCTGGTGTTTTGCAGAAAACACTTGCTTCATTTTCTGACAGTAGTAGCAATAGCAGCCCAAGGGTTGCATCATCAAGAGCCAATAATTCTGATATTGCCTTCAGGTTCAACCAAAAGTAA 1701 0.4051 MSQFGFSYKELNKNSVTTATTTSSVVGLGVKKVQQTLEAFPSNKNSVIMMLHHNHHHRPFSQPFDSDSSVAGDGDGPTHTNYMSNWTNHMNLVTTSGAYSAIDGAGSVPVRTLQQPFDTSAYYASGYPAFKSSDMMAASLGFPFTSAQWKELERQAMIYKYMVASVPVPHDLLIPSYSPSTLNGGFNLRLSSNDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVHTNNNQNQIKRAKHDSNLFPTSDSTTTTKGGSTSQFVASGTSQQYLDSSSLSLHDFGVKTRNFDPVASVPSNKESRGLEWMLNGDPISLGASHSEFQNLMHNKVGLTTESSFNDTEPQYLNSFALYNSAILDQQNQHPPMFLNPIDFPMENLQSQKPRGSIDAWSTEQNNGNTNKTNVGSIGKLSLSSLDLSMGGGCVHEDTNTIDMCLGLMENENNTQHNDTKTHLSNWLTPSLSSPHWVASTTLGGPLAEVLRPSTFTNDAASNPSSSVITHAESSSSHLGTLVSSPSGVLQKTLASFSDSSSNSSPRVASSRANNSDIAFRFNQK 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0530 566 MobiDBLite consensus disorder prediction 226 271 - -
Lal4g0530 566 PANTHER - 86 555 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lal4g0530 566 SMART QLQ_2 142 178 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal4g0530 566 MobiDBLite consensus disorder prediction 499 524 - -
Lal4g0530 566 ProSiteProfiles WRC domain profile. 194 238 IPR014977 -
Lal4g0530 566 Pfam QLQ 143 174 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal4g0530 566 Pfam WRC 195 237 IPR014977 -
Lal4g0530 566 MobiDBLite consensus disorder prediction 237 271 - -
Lal4g0530 566 ProSiteProfiles QLQ domain profile. 143 178 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lal4g0530 566 PANTHER GROWTH-REGULATING FACTOR 7 86 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0530 Lal-Chr4 3848790 3852396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0530 399 543 GRF Transcription Factor Family AT5G53660 34.810 5.15e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lal4g0530 WRC 6.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0530 - - lang:109328362 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0603 17 4328680 4331672 Lal4g0530 4 3848790 3852396 ECH
Lal4g0530 4 3848790 3852396 Lal4g0530 4 3848790 3852396 ECH
Lal17g0603 17 4328680 4331672 Lal4g0530 4 3848790 3852396 LSH
Lal21g0591 21 4425955 4428564 Lal4g0530 4 3848790 3852396 LSH