Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0525 ATGGGGGTTGGTGGAGATCATAATAGTCATAATAATCACAAGAACAACCACATGAGTTTACATCTACCACTCCCTTACCTTCATTTTCTTCACAATCTTGACAAGAAGGATGTGAAGGACATTCCAAAAGGGTGTTTAGCCGTCCTAGTGGGACAAGGAGAACATCAACAAAGGTTTGTGATCCCTGTGATCTACTTCAACCATCCACTTTTCATGCAATTGTTGAAAGATGCTGAAGAAGAATATGGGTTCGAGCACAAAGGCCCTATTACCATTCCATGCCAGGTGGAAGAATTTCGCACCGTTCAAGACATGATTGATCGAGAGATATCTTTTCACCATCATCATCACCATCATAATAATTATCATGTTTGGTGCTTTAAAGTTTGA 390 0.4 MGVGGDHNSHNNHKNNHMSLHLPLPYLHFLHNLDKKDVKDIPKGCLAVLVGQGEHQQRFVIPVIYFNHPLFMQLLKDAEEEYGFEHKGPITIPCQVEEFRTVQDMIDREISFHHHHHHHNNYHVWCFKV 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0525 129 Pfam Auxin responsive protein 36 106 IPR003676 GO:0009733
Lal4g0525 129 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 21 121 - -
Lal4g0525 129 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 21 121 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0525 Lal-Chr4 3807066 3807455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0525 40 100 Calmodulin-binding Proteins AT3G43120 55.738 1.08e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0525 K14488 - gmx:100526867 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0600 17 4296361 4296732 Lal4g0525 4 3807066 3807455 ECH
Lal4g0525 4 3807066 3807455 Lal4g0525 4 3807066 3807455 ECH