Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0524 ATGATGGAAGAAGATGAGTATATTCAAGCATCATCAAAAGGAAAAAATGTTGAAAGCTTATCTTGTAGCTCAGAGTTACAATATCAAAATCCAAGGAAGAAAAAGAACAAGTTAGAGAACAAAAGAAGGTTCAGTGATGAACAAATAAGATCACTTGAATGCATATTTGAGTCAGAGTCAAAGCTAGAGCCAAAGAAGAAGTTGCAGCTAGCAACAGATCTTGGTTTGCAACCTCGCCAAGTTGCTATATGGTTTCAGAACAGAAGGGCTAGGTGGAAATCCAAAAGGATGGAACAAGAGTATAGAAAACTCAGAGATGAATATGATAACTTAGCATCAAGGTTTGAGTCTCTAAAGAATGAGAAAGAATCTTTACAATTAGAGTTGCAGAAGCTAAGTGAAGTGAAAGTAGGCAAGGAAAATAGCACAGAAGATGGTGTTTCTGGCAGTGGATACAATAATTGGAGGGTTGAAATGAAGCCAAGTTTTGAAGACATAGAAGGCATGCATTATTCAGATGATCAAAATGAGAAGAGCATAAAGAGTGAAAAATCTGAGGAAATAGGACAACAACAACAACAAGAACAAGTTCTGAGAATGGATGAGCATGAAGAGATTCCTTTGCCATCACTTGAAAAATGGTACAATGTGGAATTAAGTGGTATCTTAGATCAATCATGCAGCAGTTCACAATGGTTAGATTTATGGACTTGA 714 0.3641 MMEEDEYIQASSKGKNVESLSCSSELQYQNPRKKKNKLENKRRFSDEQIRSLECIFESESKLEPKKKLQLATDLGLQPRQVAIWFQNRRARWKSKRMEQEYRKLRDEYDNLASRFESLKNEKESLQLELQKLSEVKVGKENSTEDGVSGSGYNNWRVEMKPSFEDIEGMHYSDDQNEKSIKSEKSEEIGQQQQQEQVLRMDEHEEIPLPSLEKWYNVELSGILDQSCSSSQWLDLWT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0524 237 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Lal4g0524 237 Gene3D - 39 101 - -
Lal4g0524 237 PRINTS Lambda-repressor HTH signature 66 75 IPR000047 GO:0003677
Lal4g0524 237 PRINTS Lambda-repressor HTH signature 75 91 IPR000047 GO:0003677
Lal4g0524 237 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Lal4g0524 237 MobiDBLite consensus disorder prediction 1 42 - -
Lal4g0524 237 MobiDBLite consensus disorder prediction 167 185 - -
Lal4g0524 237 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 237 - -
Lal4g0524 237 SMART HOX_1 37 99 IPR001356 GO:0003677
Lal4g0524 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 237 IPR045224 GO:0003700
Lal4g0524 237 MobiDBLite consensus disorder prediction 167 203 - -
Lal4g0524 237 Pfam Homeobox associated leucine zipper 95 134 IPR003106 GO:0006355|GO:0043565
Lal4g0524 237 Coils Coil 35 55 - -
Lal4g0524 237 MobiDBLite consensus disorder prediction 12 29 - -
Lal4g0524 237 SUPERFAMILY Homeodomain-like 22 95 IPR009057 -
Lal4g0524 237 CDD homeodomain 41 96 IPR001356 GO:0003677
Lal4g0524 237 Pfam Homeodomain 41 93 IPR001356 GO:0003677
Lal4g0524 237 Coils Coil 87 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0524 Lal-Chr4 3794807 3796279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0524 20 237 Homeobox Transcription Factor Family AT2G46680 40.486 4.79e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal4g0524 Homeodomain 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0524 K09338 - gmx:100499926 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0617 6 3981737 3983435 Lal4g0524 4 3794807 3796279 ECH
Lal22g0559 22 3812809 3814709 Lal4g0524 4 3794807 3796279 ECH
Lal18g1051 18 13528718 13529878 Lal4g0524 4 3794807 3796279 ECH
Lal4g0524 4 3794807 3796279 Lal4g0524 4 3794807 3796279 ECH