Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0517 ATGGGTGGTTCATCAGATACGAGGTTACTGCAAGACCTTCTATTATACGCAGCGAGCGCTGCTTTGAGTTGCTTGGTTTTATTCGCGGGGCTCCGACACCTTGACCCGAACCGTGAGGCATCGAAGAAGGCTTTAGAACATAAGAAAGAGATTGCCAAGCGTCTCGGTCGACCCCTTATTCAGACAAACCCTTATGAGGAATATGGTGGTTTTATAAATGTAACATTTTGGGTAAAGGAATGTAAGTTATTAAACTTCATTACTGTTCTGCTTTGGGTGAGAAGAAAGTTGAGAAAGGAATGGTACAGAATGCACCGGCTTGAATTGTTACCGCCTGTCAAAGATGTGGGAAGGAAGGATGTCATTGCCTGTGATGTTATAAATCCTGACCACATTGATGTAGAGTTTAATTCTATTGGTGGACTGGACGCAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCTGACCTGTTTTCTCATGGCAAGCTTCTTGGACCACAAAGGGGGGTTCTGCTGTACGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCAGAAGCAGTTTTTATTAATGTGAGGATATCAAACCTAATGAGCAAGTGGTTTGGTGATGCTCAAAAGCTTGTGGCTGCCGTATTTAGCCTGGCTCATAAACTCCAGCCTGCTATCATATTCATTGATGAAGTTGACAGCTTTTTGGGTCAACGTCGTACAACAGATCACGAGGCTTTGTTAAACATGAAAACCGAATTCATGGCTCTTTGGGATGGATTTACCACAGATCAGAATGCTCGAGTTATGGTTCTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCAATACTCCGGCGTCTTCCTCAAGCCTTTGAGATTGGAGTTCCAGACCATAGAGAGCGGGCTGAGATATTGAAGGTTATCTTAAAGGGTGAGAGTGTTGAAGACAACATTGACTTTGGTTATATAGGTGGTTTATGCGAAGGTTATACTGGTTCAGATCTAGTTGATCTTTGCAAGAAGGCTGCATATTTTCCTATTAGAGACCTACTGGATGAAGAGAAGAAAGGGAAACGATCTTCTGTGCCTAGGCCTTTGTCGCAGTTAGATTTGGAGAAGGCCCTTGCTACTTCACAGAAGACAAATGTTGCTGCAAGTGAATATGGCGGAATAAGCCTACAGTCACCATCAAGATTTACAGTGCACAGTGAGTCAGGTGATTATCCGCTTCAAGCGGCAATCAATGAATTCTCTAAGCTTATGGTTTCTCACATGCTTAACCTCCACCAATCAGATGCTCAGGATCCTTAA 1341 0.4348 MGGSSDTRLLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEEYGGFINVTFWVKECKLLNFITVLLWVRRKLRKEWYRMHRLELLPPVKDVGRKDVIACDVINPDHIDVEFNSIGGLDAIKQALFELVILPLKRPDLFSHGKLLGPQRGVLLYGPPGTGKTMLAKAIAKESEAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGVPDHRERAEILKVILKGESVEDNIDFGYIGGLCEGYTGSDLVDLCKKAAYFPIRDLLDEEKKGKRSSVPRPLSQLDLEKALATSQKTNVAASEYGGISLQSPSRFTVHSESGDYPLQAAINEFSKLMVSHMLNLHQSDAQDP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0517 446 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 111 401 - -
Lal4g0517 446 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 67 - -
Lal4g0517 446 Gene3D - 306 386 - -
Lal4g0517 446 Pfam ATPase family associated with various cellular activities (AAA) 175 304 IPR003959 GO:0005524|GO:0016887
Lal4g0517 446 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 111 401 - -
Lal4g0517 446 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 67 - -
Lal4g0517 446 SMART AAA_5 171 307 IPR003593 -
Lal4g0517 446 Pfam AAA+ lid domain 327 363 IPR041569 -
Lal4g0517 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 363 IPR027417 -
Lal4g0517 446 ProSitePatterns AAA-protein family signature. 277 296 IPR003960 GO:0005524|GO:0016887
Lal4g0517 446 Gene3D - 133 391 IPR027417 -
Lal4g0517 446 CDD AAA 169 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0517 Lal-Chr4 3745802 3750670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0517 134 369 Calmodulin-binding Proteins AT3G56690 33.471 6.16e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0517 K22530 - gmx:100796908 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0592 17 4233397 4238514 Lal4g0517 4 3745802 3750670 ECH
Lal4g0517 4 3745802 3750670 Lal4g0517 4 3745802 3750670 ECH