Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0513 ATGATGATGGATTTAATAGTTCAAGCCTCGCTTGTCCCGGTATCGGAGTTACTTTCCGACACCATCTTTACAATATTTGACACTGTCAAAGCAGCCAATGAGGTTGTCATTCACAAGGAAAATTTTAAGAAATTCTCAATTCACTTGGAGAAGATCTCATTTATATTGAAGTCTTTGTCAAAGGAAGACACACACAATTCCGAAAGCTTCGGTAATGCTATGAATGCTCTCAACCGAGAGGTTCAAGTTGCTAAGAAGTTGGTTTTGGAATGCAACAGTAGAAGTAAGGTTTATCTTCTAATCAATTCTCGAAGGATTGTTTCGCGCTTGAAGTGTTGTATTGAAGATATAAGTAGAGCAGTGAATCTTATCCCTTTGTCCTCTTTGGACATTAACTTTGGTTTAAACAAAGAGATAAGTGAGCTATGCCGGAACATGTTAGATTCTGAGTATCAAACAGCTGCACTAGATGAGGAAATCTTGGAAAAAATTGAGACTGCAATACAAGAGGGAAATGCGGATCGATCATACGCGAATCGGTTGCTACTTTGTATTGCAGATGCTATTGGTGTCTCCACTGAGCATGCTGCTTTGAAGAGAGAATTTGAAGAACTGAAAAGTGATATAGAGATTGCTAAGTCTAGGAAAGATATGGCAGAAGTTCTACATATGGAGCAGATTATTTCAGTGCTCGAAAAGTCCGATTCGATAACTTCAGCGCGAGAGAAGGAAAAGAAGTATTTCGAAAAGAGAAATTCTTTAGGAAGGAGGCCATTGCTGCCCTTGCATTCATTTTACTGTCCAATCTCTCTTGATATTATGGTGGACCCTGTGGAGACTTCTTCTGACAAGACATTCGAGAGAAGTGCAATAGAGAGGTGGTTCGCCGAAGGGAACAGTCACTGTCCTTTGACAATGTTGCCTTTGGATACTTCTATCCTAAGGCCTAATAAGACTCTTAGACAGTCTATTGAAGAATGGAAAGACAGGAACACAATCATTACCATTTCTACTATCAAGTCCCAACTTGAAACAGATGAAGAAGAGGAAGTGATAGAGTCCTTAGACAAATTGCAGGAGCTGTGCTTAGAAAGAGAGATTCACAGAGAATGGTTGAAAATGGAGAATTACATTGCTGTTCTTGTCGGACTTCTTGGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTTATCATCTTGTCTTTACTTGCAGTGGATAATGAAGAGAACAAGGAGGATATTGCTAAAGTGGATAATGCACTTGGATCAATTGTTCGCTCACTTGCACGTCGAGTTGAGGAAAGTAAGTTAGCATTGGAGTTGCTGTTGGAGTTATCTAAAAATAAAATGGTGCTTGGCCTCATAGGTAACATTCAAGGAAGCATACTTCTCCTGATGACAATGTTAAACAGTGATGATGTTGAAGCATCGAAAAATGCGCATGAGCTTCTGGAGAACCTTTCTTTCCTTGAGCAGAATGTCATAGAGATGGCAAAGGCTAATTATCTTAAGCCTTTGCTGCTGAACCTTTCTACAGGACCAGAAAACATGAAGATAATCATGACAGAAACTTTGTCGAAAATTGCATTGACTGACCAGAATAAATTGTCCTTGGTCAAAGACGGGGCATTGCAGCCTCTTCTTCATCTGCTTTTAAATGATAATGTCGAAATCAAGAAAGTGGTTGTCAAAGCTCTACTACAGCTCTCAAGCATGCCAGAGAATGGCCTTCAGATGATACGGGAAGGTGTTGCTCAACCACTACTGGAGCTGCTATACTGTCACAGTTTACAATCCCCTACTTTGCGCGAACAAGTTGTTGCCACGATCATGAATCTTGCCGTATCAACAAATCACGAACAAATTGAAGAAGAGCGAGTCTCGTTGTTAGATTCTGAGGAAGATATATTCAAATTCTTCTCTTTAATTTCATTAACAGGACCCGAGATACAAATCATGATTCTCAAAGCTTTCCAGGCATTGTGCCAGTCTTTCTCTGGCTTCACCATCAGAAATAGGTTGAGACAGATATCAGCTGCCAAAGTACTGGTCCATTTGGTAGAGCTTAATGCTCAAACAGTGCGGGTAAATGCCTTGAAACTTTTCTATTGCTTGACAGAAGACAGTGATTACAGCAACTTCTCATCGCATATAACTGAAAGGTTTGTTAAACTCTTGCTCACAATCATCGACACTTCTGATGAAACAGAAGAGATGGTTGCTGCTTTGGGCACTATATCTAAACTACCACAGGAATCACACATGACCCAGTGGCTTCTAGATTCTGGAGCACTTCAAACCATTTTGGCTTGTCTTACAGATCAAAACAAACATGCCTCACACAAAAAGCAAGTCATAGATAACTCTGTCCAAGCGCTTTGTCGTTTTACTGTCTCAACAAATGTGGAATGGCAAACGAGAGTAGCTGAAGAAGGCCTAGTCCCAGTGCTGGTGCAATTGCTGGTTTCTGGAACACCTATTTCAAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCGGAAAGTTCATACCGCTTGAGCAAGCCGATAAAGAAGCCGAGTATTTTCAAAGCATGCTTTATAGCCAATGAAATTGGTTGTCCAGCACACAAAGGCACTTGTTCAATTGAGTCTTCATTCTGCATTTTACAAGCTAATGCTTTGGAACCCCTTGTGAGGATGCTTAGGGAGCAAGATATAGTAACATGTGAAGCTTCCTTAGATGCACTATTAACTTTGCTTGACGGTGAAGCACCACAGAGTGGAAGTAAGGTACTCGAAGATGCAAATGCTATCACACCGTTGATAAAATTGTTAAGCCTTCAAGCTACAAGGTTGCAGGAAAAAACTCTGATCGCTTTAGAACAAATTTTTCAACTGGATGAAGTGAAAAATAAGTACAAAACTGTGGCCACTATGCCGTTGGTCGACATAACACAGAAGAAAGATAGTAGATTAAAAAGCCTTGCTGCCAAAAATCTTGCTCAATTGGGAGTGATTGATAAACAGTCTTCTTATTTTTAG 3024 0.4008 MMMDLIVQASLVPVSELLSDTIFTIFDTVKAANEVVIHKENFKKFSIHLEKISFILKSLSKEDTHNSESFGNAMNALNREVQVAKKLVLECNSRSKVYLLINSRRIVSRLKCCIEDISRAVNLIPLSSLDINFGLNKEISELCRNMLDSEYQTAALDEEILEKIETAIQEGNADRSYANRLLLCIADAIGVSTEHAALKREFEELKSDIEIAKSRKDMAEVLHMEQIISVLEKSDSITSAREKEKKYFEKRNSLGRRPLLPLHSFYCPISLDIMVDPVETSSDKTFERSAIERWFAEGNSHCPLTMLPLDTSILRPNKTLRQSIEEWKDRNTIITISTIKSQLETDEEEEVIESLDKLQELCLEREIHREWLKMENYIAVLVGLLGSKNREIRKRVLIILSLLAVDNEENKEDIAKVDNALGSIVRSLARRVEESKLALELLLELSKNKMVLGLIGNIQGSILLLMTMLNSDDVEASKNAHELLENLSFLEQNVIEMAKANYLKPLLLNLSTGPENMKIIMTETLSKIALTDQNKLSLVKDGALQPLLHLLLNDNVEIKKVVVKALLQLSSMPENGLQMIREGVAQPLLELLYCHSLQSPTLREQVVATIMNLAVSTNHEQIEEERVSLLDSEEDIFKFFSLISLTGPEIQIMILKAFQALCQSFSGFTIRNRLRQISAAKVLVHLVELNAQTVRVNALKLFYCLTEDSDYSNFSSHITERFVKLLLTIIDTSDETEEMVAALGTISKLPQESHMTQWLLDSGALQTILACLTDQNKHASHKKQVIDNSVQALCRFTVSTNVEWQTRVAEEGLVPVLVQLLVSGTPISKQNAAISIKQFSESSYRLSKPIKKPSIFKACFIANEIGCPAHKGTCSIESSFCILQANALEPLVRMLREQDIVTCEASLDALLTLLDGEAPQSGSKVLEDANAITPLIKLLSLQATRLQEKTLIALEQIFQLDEVKNKYKTVATMPLVDITQKKDSRLKSLAAKNLAQLGVIDKQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0513 1007 CDD RING-Ubox_PUB 265 306 IPR045210 -
Lal4g0513 1007 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Lal4g0513 1007 SUPERFAMILY RING/U-box 260 333 - -
Lal4g0513 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Lal4g0513 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Lal4g0513 1007 SUPERFAMILY ARM repeat 335 620 IPR016024 -
Lal4g0513 1007 Coils Coil 195 215 - -
Lal4g0513 1007 Pfam MCAfunc domain 29 148 IPR045766 -
Lal4g0513 1007 Gene3D - 858 997 IPR011989 -
Lal4g0513 1007 SUPERFAMILY ARM repeat 517 855 IPR016024 -
Lal4g0513 1007 Gene3D - 333 435 IPR011989 -
Lal4g0513 1007 Gene3D - 16 128 IPR036537 GO:0007166
Lal4g0513 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 332 IPR013083 -
Lal4g0513 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lal4g0513 1007 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1007 - -
Lal4g0513 1007 SUPERFAMILY ARM repeat 789 999 IPR016024 -
Lal4g0513 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1007 - -
Lal4g0513 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lal4g0513 1007 Gene3D - 436 631 IPR011989 -
Lal4g0513 1007 SMART arm_5 874 915 IPR000225 GO:0005515
Lal4g0513 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Lal4g0513 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Lal4g0513 1007 SMART arm_5 801 841 IPR000225 GO:0005515
Lal4g0513 1007 SMART arm_5 572 615 IPR000225 GO:0005515
Lal4g0513 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Lal4g0513 1007 Gene3D - 632 857 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0513 Lal-Chr4 3717148 3723115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0513 264 1007 U-box Gene Family AT1G76390 27.456 1.23e-57 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0513 - - gmx:100818273 1487.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0513 4 3717148 3723115 Lal4g0513 4 3717148 3723115 ECH