Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0507 ATGGGTAGCTTCAGCGGAGATGAGGAATGTGAGTTTTTTGATGCTGTTGAGGATATTGGGTTTATTGCTGATTCAAAATTGGACGGCAAAGACAGTGATTCTAGTGCTAGAGAAGGAATGTCCAAAGGTTTTGATTATGATGTGTGGATTAGGAGACCGAAGAGTGTGAGAGAGCGAAGGAGTAGGTTTATGCAGAGAATGGGGTTGAGTGTGACTGGGAATGGAGTTAAAAATTCAGTGGACTTGGGTGGTGGTGTTGAAGGGGAAAAGGTGAATAATAGTGTGAATGATATTGATGGGGTTGTGGATAGAAATTCTGGTTTTGAGGAGGAGTTCTGTTCGAGCCGGTCATCGATGTCTTGTTGGTCTACTATGAATTCTTCGGAGGAGTTTGGTTTGGTGGAGAATTTGCCTTGTCACGTGGATCGGGAGGGGCAGGATAGGAAGATGAGTGATGGTGGTAGAGATATCGATTTCGATAGGTCGGTGGTTGTTGAGGAACCTGAGGATTCTGAGAAAAACTTCCAACAGCTCGCGAGTAGGGAGTTTGAAGAGATCGATGCGGATGCTTTATCGAAGAAGTCCAACAGGTCCGGAAGGGGTTGGTTAAGAAGATTGCAGTCGATAACATGTATAAGGGATAAGCAAATTGACAGTGAAAATGGGGGAGAAGGAGATAGTTGTGTAATCTCAGGGTGTAGGCTTCAGAAAGTTAAGGTTCGTCAATGCAAGAAGCAAATGAAGGAACTTTCAGCTCTTTACATGAGGCAAGACATCCAAGCACACGAAGGTTCGATTTTGACCATGAAATTCAGCCCCGATGGGCAGTATCTTGCCAGTGCTGGCGAAGATGGTGTTGTGCGCGTGTGGCAAGTGGTTGTGGACGATAGGTGCAATGAAATTGACATTCCTGAAATTGATCCATCCTGCATTTACTTCACAGTGAATAATCTCTCTGAATTGAGGCCGCTGTTTATGGACAAGGAAAAACTTACCAAGGTGAAGGGCCTGAAAAAAACATCAGATTCAGCTTGCATTATTTTCCCGCCTAAGATCTTTCGGTTGTTGGAGAAACCATTGCATGAGTTCCATGGTCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAATAATAATTATCTTCTGTCATCTTCAGAGGATAAAACTGTCCGTCTATGGCACGTGAAACATGAAAATTGCCTGAAAATTTTCTCACACAGTAATTATGTGACATGCATACAATTCAATCCCGTGGATGACAATTATTTCATTAGTGGATGTATAGATGGAAAAGTGCGCATCTGGGAAATTCCTGATTGTCATGTTGTTGATTGGATTGATACTAGAGAGATAGTGACTGCAGTATGTTATCGGCCTGACGGACAGGCAGGGATTATTGGCTCCATGGCAGGCAATTGTCGATATTTTAATGCATCAGAGAATCACTTGCAGTTAGATTCCCAACCATGCTTGCTTGGTAAAAAGAAAGTTCCTGGCAGAGGGATAACTAGCTTTCAGTTTCTTTCACAAGATTCTAACAAAGTTATGGTTACTTGTGCTCATTCACAAGTCAGAATCCTTTGTGGGCATAATGTGATTGACAAATACAAAAGCCTAACTGGTGGGAGTGCAATGTCTGCATCTTTTACTTCTGATGGGAAACATATATTATCGGCCTGTGAGGACTCTAATGTATATCTATGGAACGTTAGTCAGAATGAGTCTAGTCCTACAAAAGTTAAGAAGATTACATCTTGTGAGCGGTTTTTCTCAAATGCATCTATCGCAATACCTTGGCATGGTTTAAAATCTCAAAATACTGAAAATGGACTTCAATTGGATTTCTTGGATAGAAGATCGCCTCTAGGTATACGACTCAATTCACCCGCGTCTTTCTCTCTCGACCAAGAGTTTTCCTTGGAGTCTTTTCCTAAGGGATCTGCCACTTGGCCTGAAGATAAACTTCCTGTTGCAAGCTCCAAGGCTAAAACATCTGCAATGCATAAATCTGAATACAAGTTCTTGAAATCTTCTTGTAAGACTACCTCCCAATCTCATGCGTGGGGCATGGTGATTGTGACTGCAGGATGGGATGGGCGAATAAAATCATTCCACAATCATGGGTTACCTGTACCTGTTTGA 2142 0.423 MGSFSGDEECEFFDAVEDIGFIADSKLDGKDSDSSAREGMSKGFDYDVWIRRPKSVRERRSRFMQRMGLSVTGNGVKNSVDLGGGVEGEKVNNSVNDIDGVVDRNSGFEEEFCSSRSSMSCWSTMNSSEEFGLVENLPCHVDREGQDRKMSDGGRDIDFDRSVVVEEPEDSEKNFQQLASREFEEIDADALSKKSNRSGRGWLRRLQSITCIRDKQIDSENGGEGDSCVISGCRLQKVKVRQCKKQMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASAGEDGVVRVWQVVVDDRCNEIDIPEIDPSCIYFTVNNLSELRPLFMDKEKLTKVKGLKKTSDSACIIFPPKIFRLLEKPLHEFHGHRGEVLDLSWSNNNYLLSSSEDKTVRLWHVKHENCLKIFSHSNYVTCIQFNPVDDNYFISGCIDGKVRIWEIPDCHVVDWIDTREIVTAVCYRPDGQAGIIGSMAGNCRYFNASENHLQLDSQPCLLGKKKVPGRGITSFQFLSQDSNKVMVTCAHSQVRILCGHNVIDKYKSLTGGSAMSASFTSDGKHILSACEDSNVYLWNVSQNESSPTKVKKITSCERFFSNASIAIPWHGLKSQNTENGLQLDFLDRRSPLGIRLNSPASFSLDQEFSLESFPKGSATWPEDKLPVASSKAKTSAMHKSEYKFLKSSCKTTSQSHAWGMVIVTAGWDGRIKSFHNHGLPVPV 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0507 713 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 403 IPR001680 GO:0005515
Lal4g0507 713 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 396 - -
Lal4g0507 713 Gene3D - 243 601 IPR015943 GO:0005515
Lal4g0507 713 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Lal4g0507 713 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
Lal4g0507 713 PRINTS G protein beta WD-40 repeat signature 423 437 IPR020472 -
Lal4g0507 713 SUPERFAMILY WD40 repeat-like 254 703 IPR036322 GO:0005515
Lal4g0507 713 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Lal4g0507 713 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 713 - -
Lal4g0507 713 PANTHER WD REPEAT DOMAIN 44 7 713 IPR040324 -
Lal4g0507 713 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 292 - -
Lal4g0507 713 Pfam WD domain, G-beta repeat 399 435 IPR001680 GO:0005515
Lal4g0507 713 Pfam WD domain, G-beta repeat 260 290 IPR001680 GO:0005515
Lal4g0507 713 Pfam WD domain, G-beta repeat 358 393 IPR001680 GO:0005515
Lal4g0507 713 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 437 - -
Lal4g0507 713 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 292 IPR001680 GO:0005515
Lal4g0507 713 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 437 IPR001680 GO:0005515
Lal4g0507 713 SMART WD40_4 439 477 IPR001680 GO:0005515
Lal4g0507 713 SMART WD40_4 668 705 IPR001680 GO:0005515
Lal4g0507 713 SMART WD40_4 356 394 IPR001680 GO:0005515
Lal4g0507 713 SMART WD40_4 252 291 IPR001680 GO:0005515
Lal4g0507 713 SMART WD40_4 397 436 IPR001680 GO:0005515
Lal4g0507 713 SMART WD40_4 520 569 IPR001680 GO:0005515
Lal4g0507 713 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 578 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0507 Lal-Chr4 3647965 3652840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0507 259 417 U-box Gene Family AT2G33340 23.529 5.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0507 - - gmx:100817209 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0582 17 4138366 4143175 Lal4g0507 4 3647965 3652840 ECH
Lal23g0525 23 8044037 8048371 Lal4g0507 4 3647965 3652840 ECH
Lal16g1130 16 7674844 7679244 Lal4g0507 4 3647965 3652840 ECH
Lal4g0507 4 3647965 3652840 Lal4g0507 4 3647965 3652840 ECH