Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0494 ATGGGAAAGAAATTTTTGAAAAAGGGTGAATGGCTAGAAGGGTTTGGTGATTTCATGGATTTGGATAGTATTGAGTGTGTGTCATTCTCTGATGGCATGGATGAGGATGAGATCCATCTCCTCCATCATCACCACTCTGAGTTTTCTTCCACAAAACCTCGCAATGGAACCACCAATCACAATAATTCTGTGGGTCCCACGGTTATTGCTCCTGCAACCAGCGTTCATGAATTGCTAGAGTGCCCTGTTTGTACCAATTCGATGTACCCTCCAATTCACCAGTTAGCTACTTTGCAGTGCCACAATGGCCACACGCTGTGTTCCACGTGTAAAACAAGGGTACATAACCGATGTCCCACTTGTAGGCAAGAGCTTGGAGATATTAGGTGTCTGGCATTAGAGAAGGTGGCTGAATCACTCGAGTTACCTTGTAAGTACTACTCCCTTGGATGTCCAGAAATCTCTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGGCCGTACGGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGGGATATTCCCTTCCTCGTTGCACATTTGAGGGACGATCATAAGGTGGATATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCTCGTGAAGTAGAGAACGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCATTTTGAAGCCTTCCAACTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGTTTCATGGGTGATGAGAATGAAGCTCGGAAGTATAGCTATAGCCTAGAGGTTGGGGGCAATGGTAGGAAACTCATGTGGGAGGGTATGCCACGAAGTGTTCGAGATAGCCACCGTAATGTCAGGGATAGCCATGATGGTCTCATTATTCAACGAAGCATAGCCCTATTTATCTCTGGTGGGGATAGAAAGGAGCTGAAACTCAGAGTTACTGGAAGGATATGGAAGGAACAACAGAATCCAGATGCTAGGGTGTGCCTACCAAATCTTTGTAGCTGA 1047 0.4537 MGKKFLKKGEWLEGFGDFMDLDSIECVSFSDGMDEDEIHLLHHHHSEFSSTKPRNGTTNHNNSVGPTVIAPATSVHELLECPVCTNSMYPPIHQLATLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEISPYYSKLKHETVCNFRPYGCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARKYSYSLEVGGNGRKLMWEGMPRSVRDSHRNVRDSHDGLIIQRSIALFISGGDRKELKLRVTGRIWKEQQNPDARVCLPNLCS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0494 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 192 IPR013083 -
Lal4g0494 348 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 193 327 IPR008974 GO:0005515
Lal4g0494 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT3 18 340 - -
Lal4g0494 348 Pfam Seven in absentia protein family 128 327 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal4g0494 348 ProSiteProfiles Zinc finger SIAH-type profile. 139 199 IPR013010 GO:0008270
Lal4g0494 348 SUPERFAMILY TRAF domain-like 139 331 - -
Lal4g0494 348 SUPERFAMILY RING/U-box 74 126 - -
Lal4g0494 348 CDD Sina 200 328 - -
Lal4g0494 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 138 IPR013083 -
Lal4g0494 348 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 18 340 - -
Lal4g0494 348 CDD RING-HC_SIAHs 79 122 - -
Lal4g0494 348 ProSiteProfiles Zinc finger RING-type profile. 81 122 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0494 Lal-Chr4 3538890 3542165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0494 49 334 C3H Transcription Factor Family AT2G41980 73.427 2.37e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0494 K04506 - gmx:100810573 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0569 21 4216807 4221050 Lal4g0494 4 3538890 3542165 LSH