Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0488 ATGTATGCTGAGACAGGTCTTTTCTTCCCATACTTGCAGAACTTCTCTCCACAGCTTCATCAACTTGAAGAGTACTGCAAATCACAGAAATCTAATGTTTCAATGAGTGACCTTGTACAGTACTCTGGCATGTCGGAGTATGATTTTGCAGCAGAGGGAGATCTGTTCAAAGCACCTGAACCAATCATTGAAGAGCTATTCTTGGACCTCAATCCCATAACAGCATCAATATCAGTTATGTCTCGTGGATACAATGTCTCGTCACAGGGACATCAATCCACAGATATTGATGTTCTTCAAAAAGAACAGCTTCTAAGCGACATGTTATATGAGTGCGAAAAGGATCTCTTAGAAAAGGCTGCAATTGAATCACCACTTTCTGATATTCTGGAAATCAAGGTTCCGGCTCTGAACTTAGATGAGTACTCAATTGAAGAAGATAAACCATTTCCTGACACGCCACTACCGAAGAGCGTTAGTTCAGTAAGTTTGAGCTCAATGGAGTGGATGCATGGAGCTGCAGTGAAACATGCTTTCCTTGATTTCTCAGGAATAGATTTCAATTCAGTTTATGGCATGCGAAGATCTTTTAGTGAAGGAGATATAAAGACTCTCGAAAATGGTAATGGTAACTTGAACATCGTCCAATCTCCCCGTGAGAGGCCCTTTCTAATTAGCAACTGCACCGGCGAGGAACGCCAAGAAAAACTTTCCAGATACAGGAACAAGAAGTCAAAGAGGAACTTCGGGAGGAAAATCAAGTATGCTTGCAGGAAGGCTCTTGCTGACAATCAACCAAGAATCCGCGGAAGATTTGCGAAGACCGAAGAATCCGATGCGAAAAGGCAATAA 852 0.4214 MYAETGLFFPYLQNFSPQLHQLEEYCKSQKSNVSMSDLVQYSGMSEYDFAAEGDLFKAPEPIIEELFLDLNPITASISVMSRGYNVSSQGHQSTDIDVLQKEQLLSDMLYECEKDLLEKAAIESPLSDILEIKVPALNLDEYSIEEDKPFPDTPLPKSVSSVSLSSMEWMHGAAVKHAFLDFSGIDFNSVYGMRRSFSEGDIKTLENGNGNLNIVQSPRERPFLISNCTGEERQEKLSRYRNKKSKRNFGRKIKYACRKALADNQPRIRGRFAKTEESDAKRQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0488 283 Pfam CCT motif 233 275 IPR010402 GO:0005515
Lal4g0488 283 ProSiteProfiles CCT domain profile. 233 275 IPR010402 GO:0005515
Lal4g0488 283 PANTHER CCT MOTIF FAMILY PROTEIN 26 281 - -
Lal4g0488 283 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 26 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0488 Lal-Chr4 3488441 3492691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0488 196 274 C2C2-CO-like Transcription Factor Family AT3G02380 37.778 1.37e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal4g0488 CCT 3.3e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0488 4 3488441 3492691 Lal4g0488 4 3488441 3492691 ECH
Lal17g0561 17 3993197 3998533 Lal4g0488 4 3488441 3492691 LSH
Lal21g0567 21 4189907 4194168 Lal4g0488 4 3488441 3492691 LSH