Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0487 ATGATTATTAAGCGGAACTTGAAATCCCAAATGCCGAGTGTGAAACGGTGCAAACTCAGTGACTCGGTTGGTGAAAAAAACGAGTGTTCTTATGCTCGTAAGAAGAGGAAGAGGACGAATAACGATTCATACCCTTTGAATCTTCTCGGCGACATCGCCGCCGGCGAAATTCCGGTGAGCTTTCACGGTCTGCTTACTGAGAAAGGATTCTCTGCTTCGCGGTGCACCGAAGTTTCGTGCTCCACGCCCTGCGAAGTTGAATCGAATTCGAAGGATGGTGGCTGTGGCGCCAAGCAAAATCGAGGCGGCGAGGTTCAGCGCCCGCCGCTGGTTAGGACCTCAAGAGGGAGGGTCCAGGTGCTGCCGTCACGGTTCAATGATTCTGTTATGGATAATTGGAGGAAAGACAGCAAGAGCAGCTCTCGTGAATGTGAATTTGATGATGAATTTGAACCCAGGACAGAGAAATTTGGTTTCAAAGTTCCAAAAAATTGCAATAAGAATGTGAAAAAAGGGCGAAAGGATATGAAAATGGGTTACAATCCTCAAAACTATCCAGCTTTGTGTGAGGGGAAGGGAAGGGAAAGTTTTAATTCAACTTTTGTTGAAGATGAGAGAGGGATGTTTGTGGAGATGGGAGGCGTTGAGTCAATGGGAAATGAGAGGATTTTGAAGGAGAATGGTGAGAAGAAAGATGGGTTATTTGGGCCAGAAGATTTTTATGCAGGTGATGTAGTGTGGGCCAAAGCAAGGGAAAAGGAACCTTTTTGGCCAGCCATAGTAATTGATCCTATGTATCAGGCACCTGAAATGGTCCTAAGGTCTTATGTAGCTGATGCAGCTTGTGTCACGTTTCTTGGGTATACAGGGAATCAGAATCAAAGGGACTATGGATGGGTGAAAGATAGCATGATTTTTCCATTTATGGATTATGTAGACAGGCAGCATGGTATTCCATGGTTTAGGTATCTGGGGCAGTCTGAATTGAGTTGCTATAAAGCCTCCGAATTCCAAGTGGCAATAGAAGAGGCATTTTTGGCAGACCAGGGCCACACAGAGAAATTGATAGCAGATATAAATTCAGCAGCTGCTAACACTGATATTGATGATACAATTCTTAAAGTCCTTCAGGAGGACAGTGGTCCAAACAAGCATGCAAGATATCATTTTCTGAACCAGGATTTATTTGATAAGGACACACGACCATGTGAAGCCTGTGGGTTGGCCCTTCCCTTCAAGATGTCCAAGAAGACAAAGGATTCAACTCCTGGCAGCCAATTCCTGTGTAAAACATGTGCCAGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCAGAATGTGACAAAACTTGCGGAAGCAATTTCAAGAATCTTGAAGGCATCGATTATTTCTGCCCTACTTGCAAAGACAAGTTTGGTTTTGAGTTATCTGATTCAGAAAAACTGCGGCCAAAAGCAAAGTATAACAAAAACAATGGGCAGCTTGTCCTACCAAAAAAGGTCACTGTTCTCTGCAATGGCGTAGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGACTTTTGTGGACCAGAAAAGCAAGCACTCAACGAATGGGAAAAACACACAGGTTCCAAATTAAGAAATTGGAAGACAAGTATTCGGGTGAAAGACTCCATGCTACCACTGGAACAATGGATGCTGCAGTTAGCAGAATTTCATACTAAGGCTGTAGTTTCTGTCAAACCTAAAAAAAATTCTCTGAATGATAAGAAGCAGAAATTGCTTACCGTCTTGCGAGAGAAATATGAACCTGTTAATGCTAAGTGGACTACCGAACGTTGTGCTGTATGTAGATGGGTTGAAGACTGGGACTACAACAAAGTTATCATTTGCAACAGATGCCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTAAAGACTTCACATCTTGGGTTTGCAATGCTTGTGAAATACCTTACATTAAAAGGGAGTGTTGTCTTTGTCCTGTGAAAGGTGGTGCACTAAAGCCTACGGATATTGAATCATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTAAAGTATCTTTTCCTAATGAAGAAAAGATGGAACCTGCTTTGGGTATTCTCAGTATTCCATCAAAGTCTTTTGCAAAGATTTGTGTCATCTGCAAGCAAATCCATGGTTCTTGTACACAATGCTGCAAGTGTTCAACTTATTTTCATACTATGTGTGCATCACGCGCCGGTTACCAGATGGAGTTGCACTGTTCTGAGAAAAATGGTAAGCCAACAACAAAATGGGTTTCTTATTGTGCTTACCACAGGGCTCCCAAACCCGACAACGTTTTGATTATGCAAACACCTAGTGGAGTTATTTCAACTAGAATCCTTCTTAAAAATAATAGAAAGGGTAGATCAAGGCTGATTGCATCCAATAAAATAAAGCAAGATGACATTCCCCCGGTCGATAACGCGGAGGATGAGCCATTCACTGCTGCTCGGTGCCGTATTTTTCGAAGAACAAATCATACGAAGAAGAGAACTGCAGATGAAGCCATTTTTCATCAAGTGAGGGGTCCCCGGCATCATCCTTTAGATGCAATACAGAGATTAAACAAATACAAACATATGTTAAAGGAACCCAAGGCATTTTCCTCTTTCAGAGAGCGCCTTCCTTACTTACAGAAAACCGAAAATGAACGCGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGACTCTTTGCACGTAGAGATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGAGGCAGCATTGCAGATCTGAGAGAGGCACGCTATAGATTAGAAGGCAAAGACTGCTATCTGTTTAAGATAAGTGATGAAGTGGTGGTAGATGCTACTGATAAAGGAAATATAGCACGGCTCATTAATCATTCTTGTATGCCCAATTGCTATGCCAGGATCATGAGTGTCGGCGACGACAAGAGCAGGATTGTACTCATTGCTAAGACTAATGTATCTGCTGGTGATGAGTTAACGTATGACTATTTATTTGATCCTGATGAGCCAGATGAATCCAAAGTACCTTGTCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3141 0.4253 MIIKRNLKSQMPSVKRCKLSDSVGEKNECSYARKKRKRTNNDSYPLNLLGDIAAGEIPVSFHGLLTEKGFSASRCTEVSCSTPCEVESNSKDGGCGAKQNRGGEVQRPPLVRTSRGRVQVLPSRFNDSVMDNWRKDSKSSSRECEFDDEFEPRTEKFGFKVPKNCNKNVKKGRKDMKMGYNPQNYPALCEGKGRESFNSTFVEDERGMFVEMGGVESMGNERILKENGEKKDGLFGPEDFYAGDVVWAKAREKEPFWPAIVIDPMYQAPEMVLRSYVADAACVTFLGYTGNQNQRDYGWVKDSMIFPFMDYVDRQHGIPWFRYLGQSELSCYKASEFQVAIEEAFLADQGHTEKLIADINSAAANTDIDDTILKVLQEDSGPNKHARYHFLNQDLFDKDTRPCEACGLALPFKMSKKTKDSTPGSQFLCKTCARVRCDGCKVWVHAECDKTCGSNFKNLEGIDYFCPTCKDKFGFELSDSEKLRPKAKYNKNNGQLVLPKKVTVLCNGVEGIYFPSLHLVVCKCDFCGPEKQALNEWEKHTGSKLRNWKTSIRVKDSMLPLEQWMLQLAEFHTKAVVSVKPKKNSLNDKKQKLLTVLREKYEPVNAKWTTERCAVCRWVEDWDYNKVIICNRCQIAVHQECYGARNVKDFTSWVCNACEIPYIKRECCLCPVKGGALKPTDIESLWVHVTCAWFQPKVSFPNEEKMEPALGILSIPSKSFAKICVICKQIHGSCTQCCKCSTYFHTMCASRAGYQMELHCSEKNGKPTTKWVSYCAYHRAPKPDNVLIMQTPSGVISTRILLKNNRKGRSRLIASNKIKQDDIPPVDNAEDEPFTAARCRIFRRTNHTKKRTADEAIFHQVRGPRHHPLDAIQRLNKYKHMLKEPKAFSSFRERLPYLQKTENERVCFGRSGIHGWGLFARRDIQEGEMVLEYRGEQVRGSIADLREARYRLEGKDCYLFKISDEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDKSRIVLIAKTNVSAGDELTYDYLFDPDEPDESKVPCLCKAPNCRKFMN 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0487 1046 SUPERFAMILY Tudor/PWWP/MBT 235 349 - -
Lal4g0487 1046 CDD PHD_ATX3_4_5_like 612 658 IPR042011 -
Lal4g0487 1046 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1046 - -
Lal4g0487 1046 PANTHER PHD FINGER PROTEINS 1 1046 - -
Lal4g0487 1046 SUPERFAMILY SET domain 898 1043 IPR046341 -
Lal4g0487 1046 SMART PHD_3 723 779 IPR001965 -
Lal4g0487 1046 SMART PHD_3 428 470 IPR001965 -
Lal4g0487 1046 SMART PHD_3 612 659 IPR001965 -
Lal4g0487 1046 Gene3D - 237 352 - -
Lal4g0487 1046 SUPERFAMILY FYVE/PHD zinc finger 420 474 IPR011011 -
Lal4g0487 1046 CDD SET_SETD1-like 891 1042 - -
Lal4g0487 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 661 IPR013083 -
Lal4g0487 1046 Gene3D SET domain 887 1046 IPR046341 -
Lal4g0487 1046 ProSiteProfiles PWWP domain profile. 242 311 IPR000313 -
Lal4g0487 1046 SMART set_7 904 1027 IPR001214 GO:0005515
Lal4g0487 1046 Pfam PHD-finger 625 659 - -
Lal4g0487 1046 CDD ePHD_ATX3_4_5_like 667 778 IPR041955 -
Lal4g0487 1046 SUPERFAMILY FYVE/PHD zinc finger 611 675 IPR011011 -
Lal4g0487 1046 ProSiteProfiles SET domain profile. 904 1021 IPR001214 GO:0005515
Lal4g0487 1046 ProSiteProfiles Extended PHD (ePHD) domain profile. 664 779 IPR034732 -
Lal4g0487 1046 Pfam SET domain 915 1020 IPR001214 GO:0005515
Lal4g0487 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 780 IPR013083 -
Lal4g0487 1046 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1046 IPR025780 -
Lal4g0487 1046 Pfam PWWP domain 243 344 IPR000313 -
Lal4g0487 1046 ProSiteProfiles Post-SET domain profile. 1030 1046 IPR003616 -
Lal4g0487 1046 ProSiteProfiles Zinc finger PHD-type profile. 610 661 IPR019787 -
Lal4g0487 1046 Pfam PHD-zinc-finger like domain 666 778 - -
Lal4g0487 1046 CDD PHD_TCF19_like 429 469 - -
Lal4g0487 1046 ProSitePatterns Zinc finger PHD-type signature. 613 658 IPR019786 -
Lal4g0487 1046 SMART PostSET_3 1030 1046 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0487 Lal-Chr4 3475611 3485583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0487 613 778 C2H2 Transcription Factor Family AT3G14740 33.333 1.92e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal4g0487 zf-HC5HC2H_2 5.5e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0487 - - aprc:113853254 1618.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0487 4 3475611 3485583 Lal4g0487 4 3475611 3485583 ECH
Lal17g0560 17 3978626 3988908 Lal4g0487 4 3475611 3485583 LSH
Lal21g0566 21 4175834 4185434 Lal4g0487 4 3475611 3485583 LSH