Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0483 ATGGCACCCTTTGTTCCATTAATGATGTCCCTTTTGATAGTTTCCCTAATTCTATTCTATGGAAGCAGTAGCTGCAATGCAAAGCATGCTCTCAACTGTTCTAGGTTTTGTGGAGTTCATAACATAAGCCACCCTTTCAGGCTAAATGATAGTCCAAAACACTGTGGTAAAATGAATTACACCCTATCTTGTGAAAACAATGAATTGAAGCTGTATTGGAAATCAAAAGAGTACTATTATGTGCAGTCAATTAATTACAACAACTACACAATAAGAGTAGTTGATGCAAATATTGTCCACCATTATCATCACTCTTTTCTCCCTCCTTCTTCTTTACCACCTTATTCTTATCCCTCATTCGAGCTATATCGAAGTTATCAGTATTTAGAGTTGTCATCATATCCATATTATGGAATGAAGATATTGACAAAGGTGGTGACATATATGAGATGTCCATATCCAGTAATGCATGGCACTGCAACTTGCATGAAAGAAAATGGTTCATATATTGGGGAAGGAAGTGTTTTCCGTGTCAATGCTGGTAACGATACTCTTCAGGATTTGAGGGTAGGAGACTCGTGTCGTATAGAGTTTATGCAACCAACATCATGGCCTGAGGAATACTACAATCAAAGCAACATTTCATGCACAGATATTCATAATATGCTGCTTTATGGCTTTGAACTTTCTTGGCTGCAAAGTTTTTGTGCAGAAACTGACTACTTTGTCCAACTCGATTATGACAACAACCCTCATTGCGATTGGATCCAAATAGGTTTGTACATTGGTGCCAAGTTTTTACTTGGAACTCCATTCGTCATTATTTTCTTAATCTATAAATGGCGAAGAAGACATTTGTCTATGTATGAGGCCATTGAAAATTATCTACAAAGTGACAATAACATCATGCCAATAAGGTACTCTTACAGAGACATAAAGAACATTACATCAAAATTCAAGACAAAGTTAGGCAAAGGAGGTTTTGGTTCTGTCTTCAAAGGAAAACTTCGAAGTGGTCGTATTGTAGCTGTTAAGGTATTGGATCAAACCAAAGGTAATGGTCAAGATTTCATTAATGAAGTTGCTACTATTGGAAGAATTCATCATGTTAATGTGGTGCAGCTCATTGGTTTCTGTGTTGAAGGATCAAAACGTGCACTTATTTATGATTTCATGCCAAATGGGTCTCTTGAGAAATACATATTTTCTCATGAAGATGAATCTTCCTTAAGTTGTGAAATATTGTACTCAATTGCTCTTGGTATTGCTCATGGTATTGAGTACCTTCATAATGGGTGCAACATGAAAATTTTACACTTTGACATCAAGCCTCATAATATCCTTCTTGATGAGAAATTTAATCCAAAAGTTTCAGATTTTGGACTTGCTAGACTTTACCCTATAGATAATAGCATTGTGTCTTTGACTGGAGCAAGAGGAACTATAGGATACATGGCTCCTCTACTATAG 1470 0.3626 MAPFVPLMMSLLIVSLILFYGSSSCNAKHALNCSRFCGVHNISHPFRLNDSPKHCGKMNYTLSCENNELKLYWKSKEYYYVQSINYNNYTIRVVDANIVHHYHHSFLPPSSLPPYSYPSFELYRSYQYLELSSYPYYGMKILTKVVTYMRCPYPVMHGTATCMKENGSYIGEGSVFRVNAGNDTLQDLRVGDSCRIEFMQPTSWPEEYYNQSNISCTDIHNMLLYGFELSWLQSFCAETDYFVQLDYDNNPHCDWIQIGLYIGAKFLLGTPFVIIFLIYKWRRRHLSMYEAIENYLQSDNNIMPIRYSYRDIKNITSKFKTKLGKGGFGSVFKGKLRSGRIVAVKVLDQTKGNGQDFINEVATIGRIHHVNVVQLIGFCVEGSKRALIYDFMPNGSLEKYIFSHEDESSLSCEILYSIALGIAHGIEYLHNGCNMKILHFDIKPHNILLDEKFNPKVSDFGLARLYPIDNSIVSLTGARGTIGYMAPLL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0483 489 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 238 IPR045874 GO:0004672
Lal4g0483 489 PANTHER RUST RESISTANCE KINASE LR10-RELATED 258 488 IPR045874 GO:0004672
Lal4g0483 489 Pfam Wall-associated receptor kinase galacturonan-binding 33 95 IPR025287 GO:0030247
Lal4g0483 489 ProSiteProfiles Protein kinase domain profile. 317 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0483 489 SUPERFAMILY Protein kinase-like (PK-like) 297 487 IPR011009 -
Lal4g0483 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Lal4g0483 489 Pfam Protein kinase domain 319 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0483 489 SMART serkin_6 317 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0483 489 Gene3D Transferase(Phosphotransferase) domain 1 392 489 - -
Lal4g0483 489 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Lal4g0483 489 Gene3D Phosphorylase Kinase; domain 1 292 391 - -
Lal4g0483 489 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 10 238 - -
Lal4g0483 489 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 258 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0483 Lal-Chr4 3432540 3437194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0483 181 487 Receptor kinase-like Gene Family AT5G38260 41.846 3.38e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lal4g0483 Pkinase 2.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0483 - - aip:107607706 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0483 4 3432540 3437194 Lal4g0483 4 3432540 3437194 ECH