Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0479 ATGAAAAGAAACTCCTTTTACCTTACCTTAAATTTGACTGTTCAAAAACCACCCTTCTCTCTCTTACTCGATTGCTGTCTCTCTTTCCTCGAACTTTCTTGTTGTGTCGCCCCTTATCTTCATCTTCTTCATGTGATGCTGTATCAAGTTTTTGTTTTCGAAGAAGAAGGAGGAGGTGGTGAGAATTTGAGATTTCAGGATTGGAATTCAGAAAAGAGTCCAGAGAGCAACTATCCTGCAATTAACATAACACACCCAGGAAGAATTCGGACCACACTAAGTTCAGTTTCTGATAAGTTTCAAAGGGGCTCGGAATTCAGTTCTGAGAGGATAAAGAGATTTGGAAAATCATTCAAATTGCTTCCCCGTAACAGTTTCCTGGCAGGAAGTTTTAGTTCTAGAAAGAAAATACTTGATCCACAGGGCCCTTTCCTTCAAAAGTGGAATAAGATATTTGTATTATCATGTCTTATTGCTGTATCACTGGATCCTTTGTTCTTGTACGTCCCTGTGATTAATGATCGCAGGAAATGTCTTTCACTGGACAAGACAATGGAAATTACAGCAACTGTTTTGAGATCTTTCTCTGATATTTTTTATATAATCCACATAATTTTCCAGTTTCATACTGGATTCATTGCTCCCTCTTCTAGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGAGGTATCTGACATCATATTTCCTCGTTGACGTTCTTGCCGTTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATTCCGAAGATGAAAGGCTCTGAATCATTGAATACAAAGAACTTGCTGAAATTTGTTGTGTTCTTCCAATATGTGCCACGGTTTTTACGAATAATTCCATTATATAGAGAAGTTACAAGGACCTCTGGCATTCTCACTGAGACAGCATGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCAAGTCATGTTATTGGTGCTTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACCTGCTGGCAAGATGCTTGTCGAAGAAATTCAACATGTAACAAGGCAGATCTGTATTGTGATAATCAAGGTTTGAGTACAATTACAACGTTCCTGAATGCTTCTTGCCCAATAATTGAAGATTCAAATCTCTTTGATTTTGGAATGTTTCTTGATGCCCTTCAATCTGGTGTTGTGGAATCTGAAGATTTCCCACAAAAGTTCTTCTATTGTTTTTGGTGGGGCCTCAGAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCCATCGCTGGTTTAGTATTATTTGCATTTCTCATTGGAAATATGCAGACATATTTGCAATCAACAACTATGAGGCTGGAGGAGATGAGAGTGAAAAGGAGAGACGCAGAACAGTGGATGTCACATCGACTACTTCCTGATAGCCTGAGAGAGAGAATCAGACGGCATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTCGATGAAGACAATTTGATTTGTAATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGTTTAGCTTTGCTAATGAGAGTACCAATGTTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACTGTCTTAAGCCAGTGCTCTACACAGAAAAAAGCTGCATCGTACGCGAAGGAGATCCCGTGGATGAGATGCTCTTCATAATGCGCGGCAAGCTATTGACCATGACAACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATACCTCAAGGCTGGTGATTTCTGTGGAGAAGAGCTTCTCACATGGGCATTAGATCCTCAGTCCTCATCCAACCTTCCCATCTCAACCAGGACAGTCCAAACCCTTTTAGAAGTGGAAGCCTTCGCTCTAAAAGCTGACGATTTGAAGTTCGTTGCTTCTCAATTTCGGCGCCTTCACAGTAAGCAGCTTCGCCACACATTCAGATTCTACTCACAACAATGGCGTACATGGGCTGCGTGTTTCATACAAGCAGCCTGGAGGCGCTATACTAAAAAGAAGCTTGAAGAATCTCTCAGGGAAGAGGAGAATAGGTTGCAAGATGCATTGGCCAAGGCGGGTGGTAGCTCACCGAGTCTCGGTGCCACAATATATGCTTCTAGATTTGCTGCTAATGCGCTTAGAGCTTTGCGTCGAAATAGCACAAGGAAGACAAGGGTGCCAGAGAGAGTGTCACCCATGCTGCTTCAGAAGCCTGCTGAACCTGATTTTACTTCTGAAGAGCGGTAA 2304 0.4154 MKRNSFYLTLNLTVQKPPFSLLLDCCLSFLELSCCVAPYLHLLHVMLYQVFVFEEEGGGGENLRFQDWNSEKSPESNYPAINITHPGRIRTTLSSVSDKFQRGSEFSSERIKRFGKSFKLLPRNSFLAGSFSSRKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFLYVPVINDRRKCLSLDKTMEITATVLRSFSDIFYIIHIIFQFHTGFIAPSSRVFGRGVLVEDAWAIAMRYLTSYFLVDVLAVLPLPQVVILIIIPKMKGSESLNTKNLLKFVVFFQYVPRFLRIIPLYREVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRRNSTCNKADLYCDNQGLSTITTFLNASCPIIEDSNLFDFGMFLDALQSGVVESEDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTMRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLICNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDCLKPVLYTEKSCIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPQSSSNLPISTRTVQTLLEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYTKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNSTRKTRVPERVSPMLLQKPAEPDFTSEER 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0479 767 Gene3D Helix hairpin bin 465 529 - -
Lal4g0479 767 Pfam Ion transport protein 148 465 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal4g0479 767 Gene3D - 151 462 - -
Lal4g0479 767 SUPERFAMILY Voltage-gated potassium channels 139 460 - -
Lal4g0479 767 ProSiteProfiles cAMP/cGMP binding motif profile. 538 622 IPR000595 -
Lal4g0479 767 Gene3D Jelly Rolls 536 656 IPR014710 -
Lal4g0479 767 SMART cnmp_10 538 669 IPR000595 -
Lal4g0479 767 MobiDBLite consensus disorder prediction 739 767 - -
Lal4g0479 767 CDD CAP_ED 538 669 IPR000595 -
Lal4g0479 767 SUPERFAMILY cAMP-binding domain-like 467 660 IPR018490 -
Lal4g0479 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 60 765 - -
Lal4g0479 767 Coils Coil 690 710 - -
Lal4g0479 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 60 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0479 Lal-Chr4 3407612 3415600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0479 63 766 Ion Channels AT5G53130 78.138 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0479 K05391 - gmx:100817516 1210.67