Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0469 ATGGGAGATTCATCAAATAACCTCGTACATGAGTTGCTACAAGGTTTGGAGTTAGTAAGACAACTCCAAAAGAATCTACACATGCCTTGTTCTTCTTCCCAAGAAACCCATGAATTGTTGATTCAGAAAATTATATCAATATTTGAAAAAGCTCTTCAAATAGTAAACGGGAATAGAGGACCATTGGGTGAGCCATCATCTCAACATTCCATAGGTGTTACAATCAGAATGTCAGAGTCACCACCTTTGAGTGGTAGTCCTCACAGCGAAGACTCTGATAGAGATTTGATGGAACATGATCACAATGCTTCCAGAAAAAGAAAGAGTTTGCCAAGATGGACAAAACAAATCAGAGTTAACCCAGGAATAGGAGTGGAATTGCCTCTTGATGATGGATACAATTGGAGAAAATATGGCCAAAAAGGCATCCTTGGAGCAGTGTATCCAAGAGGCTATTATAGGTGCACCCACAGAAATGTTCATGGCTGCTTGGCCACAAAGCAGGTGCAAAGATCTGATGAAGACCCCAATGTGTTTGAAATCACTTACAAAGGAAAGCACACATGCACAATGGCCTCAAATACAATTCCTACATCTACTCCAAATGAAAACCAAGAATCAAATTTGAACACAAATCAAAATGTCCTACAAGGCCTTGAGCAGCAACCAAATCTAAATGAACTACTTTTGAACCTTAGGGCAGGCCTAAGAGTCCAAACAGAACACCTAGATTCCTCTCATGACCAACCATTTTCTTCATTCCATTTCCCTTCAAGTTCCAACATTAAAACTGAAAATCAAATTCTCACATCTCCTATGCTTGAAAACTTTAGTTCCCTTTCATTTATCCCCCCTGCCACTTCAGAAATAAGCCACTTTTCAGTGTCTCCTAGTGTAGTAAACAACATAGGAGGGTACCCAAGTATGGTAAGTTCAGAGTTTCAGATCAATGACATGATTTCAGCTACTACTTCAGCAGCAAATTCACCAACTTTTGGCATAGAGTTTCCATTTGATCAATTTGAAATTGATGGTCATAACTTCACATTTGATAACCTTCCATTTTTCTCCTAA 1074 0.3901 MGDSSNNLVHELLQGLELVRQLQKNLHMPCSSSQETHELLIQKIISIFEKALQIVNGNRGPLGEPSSQHSIGVTIRMSESPPLSGSPHSEDSDRDLMEHDHNASRKRKSLPRWTKQIRVNPGIGVELPLDDGYNWRKYGQKGILGAVYPRGYYRCTHRNVHGCLATKQVQRSDEDPNVFEITYKGKHTCTMASNTIPTSTPNENQESNLNTNQNVLQGLEQQPNLNELLLNLRAGLRVQTEHLDSSHDQPFSSFHFPSSSNIKTENQILTSPMLENFSSLSFIPPATSEISHFSVSPSVVNNIGGYPSMVSSEFQINDMISATTSAANSPTFGIEFPFDQFEIDGHNFTFDNLPFFS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0469 357 Coils Coil 202 222 - -
Lal4g0469 357 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal4g0469 357 Gene3D WRKY domain 124 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal4g0469 357 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 352 IPR044810 GO:0003700
Lal4g0469 357 MobiDBLite consensus disorder prediction 77 109 - -
Lal4g0469 357 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal4g0469 357 ProSiteProfiles WRKY domain profile. 129 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal4g0469 357 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 5 352 - -
Lal4g0469 357 SUPERFAMILY WRKY DNA-binding domain 128 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal4g0469 357 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0469 Lal-Chr4 3303151 3305538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0469 6 259 WRKY Transcription Factor Family AT4G23810 36.823 5.85e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal4g0469 WRKY 3.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0469 - - gmx:100776906 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0649 6 4239604 4242756 Lal4g0469 4 3303151 3305538 ECH
Lal16g1158 16 7911236 7914946 Lal4g0469 4 3303151 3305538 ECH
Lal4g0469 4 3303151 3305538 Lal4g0469 4 3303151 3305538 ECH
Lal17g0654 17 4646246 4651213 Lal4g0469 4 3303151 3305538 LSH
Lal21g0555 21 4090507 4092128 Lal4g0469 4 3303151 3305538 LSH