Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0468 ATGCGTTCAGCAATACATAATGCGGCCGCAACATTGCGGATGCGGCTGTACTTTCTTTGCATCTTTCCCGAGGTAGAAATAGGAAAGTCCAAAAGCTTGAAAATGAATGACACCTTTTCTGATATTTTTGAAGACAAAGAGTTTGGTGGAGATGACCTCTTTGCCATTTTGGAAAGCCTAGAAGATTTCACTACTGATTTTCCTCTCACTAACGAACCTATTATTGGCTATTCAACTTTAAAAGAGAGTGAAGAAACATTGAGATTGGTGTCAACCTCTTCAAGTGCTAAAGTACAAGAACAAGATTCTGAAGAAACTGAGCTTGAAATCTCACCAAAAAGCAAGAGACAGAAGGTTGCTGATCCTATAACTGGGACAGAAGAACAAAACCAAGATGGACAACAAAGGGTTTCTCACATAACTGTGGAGCGTAACAGAAGAAAGCAAATGAATGAGCATTTGTCTGTGTTAAGGTCACTTATGCCTCGCTTTTATGTCCAAAGAGGAGATCAAGCATCAATAATTGGAGGTGTGGTTGATTACATCAACGAGTTACAGCAAGTGCTACAAGCCCTTGAGGCCAAAAAACAAAGAAAAGTTTACACTGATGTATTAAGCCCTAGGCTAGTTTCTTCAAGTCCAAGGCCTTCACCACTTAGTCCAAGAAAACTACCTTTGAGCCCTAGACTAAACCTACCCATTAGTCCAAGGACACCACGACCAAGTAGCCCTTACAAACCAAGGTTGCAACCAACAGGTTACAATATTTCACCCACTATATCAACCTCTCTTGAGCCATCTCCTACTTCTTCTGCTAACTCCTCCATCAATGACAATATCAATGAGCTTGTTGCAAATTCAAAGTCTCCTATTGCTGACGTGGAGGTTAAGTTTTCAGGTCCAAATGTTCTTTTGAAAACGGTTTCTCAAAGAATTCCAGGTCAAGCTTTGAAGATTATGTCAACACTGGAAGAACTTGCACTTCAGATTCTCCATGTTAACATTAGTACTGTTGATGAAACCATGCTGAACTCGTTCACTATCAAGGTATATAAC 1056 0.4015 MRSAIHNAAATLRMRLYFLCIFPEVEIGKSKSLKMNDTFSDIFEDKEFGGDDLFAILESLEDFTTDFPLTNEPIIGYSTLKESEETLRLVSTSSSAKVQEQDSEETELEISPKSKRQKVADPITGTEEQNQDGQQRVSHITVERNRRKQMNEHLSVLRSLMPRFYVQRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYTDVLSPRLVSSSPRPSPLSPRKLPLSPRLNLPISPRTPRPSSPYKPRLQPTGYNISPTISTSLEPSPTSSANSSINDNINELVANSKSPIADVEVKFSGPNVLLKTVSQRIPGQALKIMSTLEELALQILHVNISTVDETMLNSFTIKVYN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0468 352 MobiDBLite consensus disorder prediction 208 275 - -
Lal4g0468 352 Pfam Helix-loop-helix DNA-binding domain 135 186 IPR011598 GO:0046983
Lal4g0468 352 SMART finulus 140 191 IPR011598 GO:0046983
Lal4g0468 352 MobiDBLite consensus disorder prediction 92 138 - -
Lal4g0468 352 PANTHER - 41 350 - -
Lal4g0468 352 MobiDBLite consensus disorder prediction 248 275 - -
Lal4g0468 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 185 IPR011598 GO:0046983
Lal4g0468 352 Coils Coil 178 202 - -
Lal4g0468 352 MobiDBLite consensus disorder prediction 100 122 - -
Lal4g0468 352 CDD bHLH_AtFAMA_like 138 208 - -
Lal4g0468 352 MobiDBLite consensus disorder prediction 232 246 - -
Lal4g0468 352 PANTHER TRANSCRIPTION FACTOR FAMA 41 350 IPR044283 GO:0003700|GO:0010052
Lal4g0468 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 202 IPR036638 GO:0046983
Lal4g0468 352 MobiDBLite consensus disorder prediction 123 138 - -
Lal4g0468 352 Gene3D - 125 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0468 Lal-Chr4 3298576 3301585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0468 35 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.099 7.79e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal4g0468 HLH 7.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0468 K20558 - rcu:8274388 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0468 4 3298576 3301585 Lal4g0468 4 3298576 3301585 ECH
Lal17g0539 17 3810526 3813418 Lal4g0468 4 3298576 3301585 LSH