Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0446 ATGGAGGATTCTTCAGCTGCTGATTCAACAGGTGAAGAAACCAAGATTTGTCCACGTGGTCACTGGAGACCAGTTGAGGATGAAAAACTGAGGCAACTTGTTGAACAATTTGGTGCCCAGAATTGGAATTCAATTGCTGAAAAGCTACAAGGAAGATCAGGGAAAAGTTGCAGATTAAGATGGTTCAACCAGCTTGACCCAAGAATTAACAGAAGGCCATTCACAGAAGAGGAAGAAGAGAGGTTACTTGCATCACACAGAATTCATGGCAACAAATGGGCACTCATAGCAAGGCTTTTCCCCGGTAGAACTGATAATTCTGTGAAGAATCATTGGCATGTTATAATGGCAAGAAGGCAAAGAGAACAATCTAAGTTATGTGGCAAGAGAAGGTTCCAAGAACTATACAATGATTCCAACATTGAAAAAATACCAAAATCTAAAGACTTATTGTTTAGCTCAAAATTTGGATTGGAGAATGCAAGATTCTTTGACTTTAGGAACCTTGATGATCACACCACTTGGAATTTTGCATCATCATCTTTTCCAATTGCAACCTCCACAAACACAAGTAATACTATTGTTGTAGCTGATTCATTTAGAAAAGGAGGGAAAGATGTTTATTTCAATAGATCTAATGTTTACTTACCAGAATGTTCAAAAAGCTCAGATAAATTTCTTTACAGAATGCATCCAAATACTACTACCACTAATGCATTCTCTTTTCCAAATTACAAGAGGGTTGTTCAAAGTCCTTTCGGATTTCTTGGCTCTTCTGATCATGATGGAAGGATAAAGAGGGATTTGAGGAGCTTCTGTGATAACTCATCCACATTCACAAACTTGAAGGCTTCTTCAGAAAAAGAACAAGCAGATTATGAACCTAATATTGAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCATCATCATAG 948 0.3755 MEDSSAADSTGEETKICPRGHWRPVEDEKLRQLVEQFGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLASHRIHGNKWALIARLFPGRTDNSVKNHWHVIMARRQREQSKLCGKRRFQELYNDSNIEKIPKSKDLLFSSKFGLENARFFDFRNLDDHTTWNFASSSFPIATSTNTSNTIVVADSFRKGGKDVYFNRSNVYLPECSKSSDKFLYRMHPNTTTTNAFSFPNYKRVVQSPFGFLGSSDHDGRIKRDLRSFCDNSSTFTNLKASSEKEQADYEPNIEHKEVPFIDFLGVGVSSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0446 315 SMART sant 18 67 IPR001005 -
Lal4g0446 315 SMART sant 70 118 IPR001005 -
Lal4g0446 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Lal4g0446 315 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Lal4g0446 315 SUPERFAMILY Homeodomain-like 18 112 IPR009057 -
Lal4g0446 315 Gene3D - 19 70 - -
Lal4g0446 315 Gene3D - 73 134 - -
Lal4g0446 315 PANTHER TRANSCRIPTION FACTOR MYB56 8 313 - -
Lal4g0446 315 Pfam Myb-like DNA-binding domain 22 82 - -
Lal4g0446 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Lal4g0446 315 MobiDBLite consensus disorder prediction 1 21 - -
Lal4g0446 315 PANTHER MYB PROTEIN-RELATED 8 313 - -
Lal4g0446 315 CDD SANT 22 63 IPR001005 -
Lal4g0446 315 CDD SANT 73 113 IPR001005 -
Lal4g0446 315 ProSiteProfiles Myb-like domain profile. 19 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0446 Lal-Chr4 3116200 3118221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0446 16 126 MYB Transcription Factor Family AT1G17950 84.685 6.48e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal4g0446 Myb_DNA-bind_6 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0446 K09422 - gmx:100802283 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0446 4 3116200 3118221 Lal4g0446 4 3116200 3118221 ECH
Lal21g0650 21 4970222 4973481 Lal4g0446 4 3116200 3118221 LSH