Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0437 ATGGGCACTGAGGGTGACACTAGCAATTCTGGTTACACAGAATGTGCTGAACAAATTCAGTGTTTGCAAGGTGAAACTAATAGTAATGGGGTGGAAGTTGCAAATGGGAATGGTTTTGCTGAAGAGTTTCAGCACTTCAAAAGTGGAGCCTTTAATAATGGGGTAGCAGTTTCAGATGTAAATGATGTTACTGAAGAGGCTTTATGCTTTAAAAGTGAAGCCATTAATAGTGGGGTAGCGGTTTCAGATGGCAATGATGTTATGGAAGAGGCCTTGTGTTTGAAAAATGAAGCCTTTAATGATGGGGTGACAATTGCAAATGGTAATGATGTTATTGAAGATGCCTTGTGTTTGAAAAGTGAAGCCATTAATAACGTTGTAGCGGTTTTAGATGGGAGTGATGTTATGGAAGAGGCTTTGTGTTTGAAAAGGGAAGCCTGTAATAATGGGGTGGCAATTGCTGATGGGAATGTTGTTACTGAAGAGGGTCTCTGCTTGCAAAGTGAAGCCATCAGTAATGCCATGGCAGTTGCAGATGGTTTTGATTCTGCTGATAGGGACTCCGGTGGAGTTGAATGTTTGCGCATTTATAAGAGGCGCAAGCGTGGGAAGTCTAGTTCAGATAACAAAGATGATAGCAGAGAATGTGTGGAAGCTGCAAGTCATCTAGAAAACCAGGAAACTCTTAAAATTAACAAAGTCAGACAAGAACGCTCTTCACAATTGGAGTGGTTGCCTCATAGAACACAAGGTGAACCTAATGGGCATGCAAATGTCATGCATAATGGATGTTCTAGTAAAACACAAGGCCATGGTGTGACTCAGACATGTCAGCGTGTGCTCTGTGATATTTTAAAATCTGAAAAATTTCAATCATTATGGAAGGCTCTACTTGAAAATTTCCAAGGAATGAAGCCTGGTAGTGTATTTGACTTCAATATCATGACCTCAAGGGTGATGGAGAAAGCTTATGAGCAATCACCTGCACTTTTCTTGTCAGATATGCAACAGGTTTGGCAAAAGCTTCAAGATACTGGTAACGAAATCGTTGATCTAGCCAAGAGCCTCTCCAATATGTCAAGAACATCATACCGTGAGCTGTTGAACAACCGGGAATCTGATTCTCACATGAAACTAGCACAGACAGAAGAACATGCCAGATATAAAATTTGCAGTTGCAGGCGTTGTGGAGACAAGACAGATGGCACAGACTGTTTGGTCTGTGATTCATGCGAGGAAATGTACCACGTCTCCTGTATTGAGCCTCCTGTGAAAGAAATACCCCACAAAAGCTGGCTCTGTGCCAATTGTACTGCTAGAGCCATTGGATCTCCACATGAGAATTGCGTAGTATGTGAAAAGTTGAATGATGTGAAGACCGAGAACAACGTAGTTGGTGATGAAAGCTTCAATGATGATGGCATTGAAGTATCCACATGTGGTGAAAACTTACCCGTTTGCAAAATTTGCGGAAACGATGTGGATGGTGAAAAAATTAAAAAGTGCGGTCACCCGGTTTGCTCCAATAAATACTACCATGTAAGGTGTTTGACAAGTAAGCAGTTAAAGTCATATAGCCACTGTTGGTACTGCCCTTCTTGTTTATGCCGAGTTTGCTTCACTGATCAAGATGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCACATCTATTGCATGAAACCTATACGAACTTCTATTCCGAAAGGGAATTGGTTCTGTAAAAAATGTGATGCAGGAATCCAAGCAATTCGGCGGGCAAAGAAGGCATACGAAATTAACAATCGGAGAAGAACCGAGGACGATGTTTCAAAGCCAAGTGTTAGTCCTGAAAAGAAATGCATCGACAAACGTGCACACGAATTGGGAACAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTGAACCTTGAAGAGAACTTGGCTTGCAATCCAAACTGA 1959 0.417 MGTEGDTSNSGYTECAEQIQCLQGETNSNGVEVANGNGFAEEFQHFKSGAFNNGVAVSDVNDVTEEALCFKSEAINSGVAVSDGNDVMEEALCLKNEAFNDGVTIANGNDVIEDALCLKSEAINNVVAVLDGSDVMEEALCLKREACNNGVAIADGNVVTEEGLCLQSEAISNAMAVADGFDSADRDSGGVECLRIYKRRKRGKSSSDNKDDSRECVEAASHLENQETLKINKVRQERSSQLEWLPHRTQGEPNGHANVMHNGCSSKTQGHGVTQTCQRVLCDILKSEKFQSLWKALLENFQGMKPGSVFDFNIMTSRVMEKAYEQSPALFLSDMQQVWQKLQDTGNEIVDLAKSLSNMSRTSYRELLNNRESDSHMKLAQTEEHARYKICSCRRCGDKTDGTDCLVCDSCEEMYHVSCIEPPVKEIPHKSWLCANCTARAIGSPHENCVVCEKLNDVKTENNVVGDESFNDDGIEVSTCGENLPVCKICGNDVDGEKIKKCGHPVCSNKYYHVRCLTSKQLKSYSHCWYCPSCLCRVCFTDQDDDKIVLCDGCDHAYHIYCMKPIRTSIPKGNWFCKKCDAGIQAIRRAKKAYEINNRRRTEDDVSKPSVSPEKKCIDKRAHELGTGGGMDMLLTAANTLNLEENLACNPN 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0437 652 Pfam PHD-finger 536 581 IPR019787 -
Lal4g0437 652 Pfam PHD-finger 393 439 IPR019787 -
Lal4g0437 652 PANTHER D4, ISOFORM A 203 645 - -
Lal4g0437 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 586 IPR013083 -
Lal4g0437 652 PANTHER HISTONE ACETYLTRANSFERASE 203 645 - -
Lal4g0437 652 SUPERFAMILY FYVE/PHD zinc finger 369 439 IPR011011 -
Lal4g0437 652 ProSiteProfiles Zinc finger PHD-type profile. 390 440 IPR019787 -
Lal4g0437 652 SUPERFAMILY FYVE/PHD zinc finger 535 587 IPR011011 -
Lal4g0437 652 SMART PHD_3 392 438 IPR001965 -
Lal4g0437 652 SMART PHD_3 538 581 IPR001965 -
Lal4g0437 652 SMART PHD_3 486 535 IPR001965 -
Lal4g0437 652 ProSiteProfiles Zinc finger RING-type profile. 487 534 IPR001841 -
Lal4g0437 652 ProSiteProfiles Zinc finger PHD-type profile. 533 583 IPR019787 -
Lal4g0437 652 Gene3D - 295 441 - -
Lal4g0437 652 ProSiteProfiles Zinc finger RING-type profile. 536 581 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0437 Lal-Chr4 3059622 3065040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0437 535 601 C2H2 Transcription Factor Family AT3G01460 41.791 3.14e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal4g0437 PHD 5.7e-12 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0437 4 3059622 3065040 Lal4g0437 4 3059622 3065040 ECH