Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0434 ATGTCAGTCTCATTCAACACTGATAAAGAACAAAACGACGACGTACTCTCATTGTGGGAAAAAATGGCGCAAAAGGGTCTTGCCGGAGAAGATATACACGGTGGTAGGACGGTGGTGGTGGGGGTGAAGCTGGATTCATACAGCAATGAATTGTTGACGTGGGCATTGGCCAAAGTTGCTCAACCTGGTGATACCGTTGTTGCACTGCATGTTCTTGTCAATAGTGAAACTGTGAATGTAGATGGGAAATTGTCGTTGCTTTCGATTGTTAAGGCGTTTGACCCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTTGATCTCAAGCTTAAGATTTGTAAAGGTTCATCTGTGAAGAAAGTTTTGGTCCAGGAAGTGAATGCTTATGCTGCAAGTCATGTTATTGTTGGAACTTCTCAACGCCGCCATAAAATTCGGTCATCTAAATCTGTAGCTAAGTATTGTGCTAGAAAGTTATCCGAAGACTGCTTTGTTTTTGCTGTTAACAATGGGAAAGTTGTATTCAAACGTTGTAGAGACGCCTTGCTACTAAATGCTGCTGTTGCTGACTTACAAGGAATTGATTGTCATTCTAGAAATGGTTTGCCTGGCTCGAATCATCGGAAACTCAGTAAGTGTTCAAAAGTACTAAGTGATGACACTAAAAACATGGATGCTGATAAGGACACTAAAAGCGTGGATGCTGATAAGGGTGTCGGCTTGAATCATCGGACACTCAGTAAGAGTTCAAAAGTGCTAAGCAATGACACTAAAAACATGGTTGCTGACAAGGGTGTTGGCCGAATTTCGGATAACAGTCTTGCTAATTTTTTTTTGGATTCTACATACACTAAAAGCATGAATGCTGATAAGGGTGTTGGCCGAATTTCGGACAACAGCCTTGCTAAGTTTTTTTTGGAGTCTACAGAAACTGTTAGAAGAGAAAGCTGCTCAATTTGTGGTCCAATTCTGGCATTGCCAGACATTTCTTGCCACCAATCTGAAGAAGAGTCTTCTGGTGAAGGTGGTAGTGAGAATTCTTTGGCTATAGTGCCTGTAAAGACCACTTATCCAAGTCAACTTGAATTGATACCGGGTTGGCCACTACTGCGCCAGAAAAGTTTATCAGGCAGGCTACATTTTGATCGATCATTTTTGCGCCTTATCTCTGTGGTCCAGTGGGCAATGAGGTTGCCCTGTAGACATCTTCCATATGCTGCAGATCATGATCATAGTTCGAACAATTTTGATCGAGGTCAAGTTCAATATGCAGCTTTAGATAGTGAAACTGTTGCCCTTGTTGCAGTAGATGCTGCGTTAGGGACTGCTCATTCACATGAATGCAATTCAATAAGTATTCCAAGAGAATTGGAGGGCCTTCATGATAAATACTCAGCTACTTGCAGGTTGTTTCAGTACAAAGAACTTGTTTCAGCAACATCAAATTTCTTGCCTGAAAACTTGATTGGGAAAGGAGGAAGTAGTCGGGTTTATAAAGGTTGCCTTCGTGATGGCAAGGAACTTGCTGTTAAGATCCTAAAGCCTTCTGATAATGTTTTGAATGAATTTCTTCTCGAAATAGAAATTATTACTACCTTGCATCACAAAAACATTATTTCCCTCTTTGGGTTCTGCTTTGAGAATGACAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAAAACCTTCATGTAGGGGATAAGAAAAAATTTGGTTGGACTGAGAGATATAAGGTAGCAATTGGTGTTGCCGAGGCTTTGGATTATCTGCATCGTAAAGATGATCAACCTGTGATCCATCGAGATGTCAAATCATCAAATGTATTATTATCCGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTTGCTAAATGGGCATCAACATCGTCCTCACACATAACCTGCACAGATGTTGCTGGAACCTTTGGTTACTTGGCTCCTGAATACTTCATGTACGGAAAAATAACTGATAAGATTGATGTCTATGCATTTGGTGTTGTACTCCTTGAACTTCTTTCGGGGAGAAAGCCCATAAGCAGTGATTATCCAAAAGGTCAAGAGAGTCTCGTTATGTGGGCAAGTCCAATTCTAGATAGTGGAAAGGTGCTACAATTGTTAGATCCCATTATGGGTGATAACTATGATCATGAGGAAATGGAAAGGATGGTCTTAGCAGCGACACTCTGTATCAGACGCGATCCGAAAGCTAGGCCTCAAATGAGCCTTATTTTGAAGATCCTTCAAGGCGATACCGATGTGATTAAGCGGGCAAGGTTAGAAGTCGATGATGCTTCAGAAGCACCCGAAATGCTCGATGTTGAAGCTTGCGCACCAAGTAATCTACAGTCATATCTTAATCTTGCACTGCTTGATGTTGAGGATGACTCACTCTCCATGTGTAGTGTTGAGCAGAATGTGTGGTTGGAGGAGTACTTGAGAAGCAGGTGGAGTTGCAGATCAAGTTTTACTAGGCAAACTACTGCAAATTGTTAG 2517 0.4136 MSVSFNTDKEQNDDVLSLWEKMAQKGLAGEDIHGGRTVVVGVKLDSYSNELLTWALAKVAQPGDTVVALHVLVNSETVNVDGKLSLLSIVKAFDPVLAVYEGFCNLKQVDLKLKICKGSSVKKVLVQEVNAYAASHVIVGTSQRRHKIRSSKSVAKYCARKLSEDCFVFAVNNGKVVFKRCRDALLLNAAVADLQGIDCHSRNGLPGSNHRKLSKCSKVLSDDTKNMDADKDTKSVDADKGVGLNHRTLSKSSKVLSNDTKNMVADKGVGRISDNSLANFFLDSTYTKSMNADKGVGRISDNSLAKFFLESTETVRRESCSICGPILALPDISCHQSEEESSGEGGSENSLAIVPVKTTYPSQLELIPGWPLLRQKSLSGRLHFDRSFLRLISVVQWAMRLPCRHLPYAADHDHSSNNFDRGQVQYAALDSETVALVAVDAALGTAHSHECNSISIPRELEGLHDKYSATCRLFQYKELVSATSNFLPENLIGKGGSSRVYKGCLRDGKELAVKILKPSDNVLNEFLLEIEIITTLHHKNIISLFGFCFENDNLLLVYDFLSRGSLEENLHVGDKKKFGWTERYKVAIGVAEALDYLHRKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKITDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWASPILDSGKVLQLLDPIMGDNYDHEEMERMVLAATLCIRRDPKARPQMSLILKILQGDTDVIKRARLEVDDASEAPEMLDVEACAPSNLQSYLNLALLDVEDDSLSMCSVEQNVWLEEYLRSRWSCRSSFTRQTTANC 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0434 838 Gene3D Phosphorylase Kinase; domain 1 457 560 - -
Lal4g0434 838 PANTHER - 308 814 - -
Lal4g0434 838 PANTHER - 30 236 - -
Lal4g0434 838 SMART serkin_6 486 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0434 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Lal4g0434 838 SUPERFAMILY Protein kinase-like (PK-like) 467 759 IPR011009 -
Lal4g0434 838 ProSitePatterns Protein kinases ATP-binding region signature. 492 514 IPR017441 GO:0005524
Lal4g0434 838 CDD STKc_IRAK 492 757 - -
Lal4g0434 838 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 168 - -
Lal4g0434 838 Gene3D Transferase(Phosphotransferase) domain 1 561 774 - -
Lal4g0434 838 Pfam Universal stress protein family 36 168 IPR006016 -
Lal4g0434 838 PANTHER OS08G0249100 PROTEIN 308 814 - -
Lal4g0434 838 PANTHER OS08G0249100 PROTEIN 30 236 - -
Lal4g0434 838 Pfam Protein kinase domain 490 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0434 838 Gene3D HUPs 35 173 IPR014729 -
Lal4g0434 838 ProSiteProfiles Protein kinase domain profile. 486 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0434 Lal-Chr4 3046014 3049578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0434 473 751 Trihelix Transcription Factor Family AT1G68690 46.831 8.75e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lal4g0434 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0434 - - aprc:113846853 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0434 4 3046014 3049578 Lal4g0434 4 3046014 3049578 ECH
Lal21g0532 21 3869347 3873154 Lal4g0434 4 3046014 3049578 LSH