Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0416 ATGACCGAGATGATGGACATCGACGGCAACGGCCACTCTTACTCTTCCAAGGGCAAAAGCGTCCTCATCGCCGGCAACCCTCCCTCCGCCGTAAAAGCCATTCCATGGGTTGAGAAATACCGTCCTCAGTCCCTCAACGACGTCGCCGCTCACCGCGACATTGTCGATACTATTGATAGGCTGACAACGGAAAACAGATTACCGCATCTTCTGCTGTATGGCCCTCCTGGCACTGGAAAAACATCAACTATTCTAGCCGTGGCGCGCAAACTGTATGGTGCACAATACCACAATATGATTTTGGAGCTCAATGCATCTGATGATAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGGTTTGTCAAGTCGTCTGTAAAATTGGTCTTGCTAGATGAAGCAGATGCAATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATCGAGAAATATACAAAAAGTACCAGGTTTGCACTTATTTGCAATCATGTAAACAAGATCATTCCAGCTCTGCAGTCAAGATGCACTCGGTTTCGGTTCGCTCCCCTTGATGCTGTCCATGTCACTGAAAGACTGAAACATGTTATCAAGGCTGAAGGGCTTGATGTTGACGACAGTGGCTTAACAGCGCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAGGCTGTTTACCTTTGCACTGGCAATCCGTTGCCCAAAGACATTGAGCAAATATCTTTCTGGCTTCTAAACGAAAAATTTGCAGATGGTTTTAAAAGAATAAATGAAATCAAGACGAGGAAAGGACTGGCCCTGGTAGATATTGTGAGAGAAGTGACAATGTTTGTTTTCAAGATTAAGATGCCTCCAGCTATTCGAGTGCAATTGATTAATGATTTGGCAGACATAGAGTATAGATTAAGTTTTGGCTGCAATGATAAACTTCAACTTGGATCAGCCATTGCTTCTTTTACACGTGCAAGATCTGCCTTGGTTGCAGCTGCTCAATAA 1077 0.4401 MTEMMDIDGNGHSYSSKGKSVLIAGNPPSAVKAIPWVEKYRPQSLNDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGFVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVDDSGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISFWLLNEKFADGFKRINEIKTRKGLALVDIVREVTMFVFKIKMPPAIRVQLINDLADIEYRLSFGCNDKLQLGSAIASFTRARSALVAAAQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0416 358 CDD AAA 54 193 - -
Lal4g0416 358 Pfam Replication factor C C-terminal domain 259 345 IPR013748 -
Lal4g0416 358 SUPERFAMILY post-AAA+ oligomerization domain-like 259 349 IPR008921 GO:0003677|GO:0006260
Lal4g0416 358 SMART AAA_5 66 197 IPR003593 -
Lal4g0416 358 Pfam ATPase family associated with various cellular activities (AAA) 70 191 IPR003959 GO:0005524|GO:0016887
Lal4g0416 358 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 27 354 - -
Lal4g0416 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 252 IPR027417 -
Lal4g0416 358 Gene3D - 259 356 - -
Lal4g0416 358 Gene3D - 197 258 - -
Lal4g0416 358 CDD HLD_clamp_RFC 194 256 - -
Lal4g0416 358 Gene3D - 29 193 IPR027417 -
Lal4g0416 358 PANTHER REPLICATION FACTOR C SUBUNIT 5 27 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0416 Lal-Chr4 2886338 2892292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0416 1 358 Core DNA Replication Machinery Family AT1G77470 78.049 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0416 K10756 - gmx:100782652 629.787