Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0404 ATGTCTTTGAGTCCTCCAAGAGATAGAAATAACAATGAACAACAAAGAACATACCAGCTATATTGGTGCTTCCAGTGCAACCGGATGGTCCGTTTTTCACCCTCAAACTCAAACCCTATCATTTGCCCGCGCTGCTTCGGTCAATTTGTGTGCGAAATAAACATTCCTTGGCCCAGGATCGTGGTTGATTTTACCAACCACGACCCTTCACCAGAGGCAGGTTTACTTGAAGCGCTTTCTCTCATGCTAGAACCTCCCATTCGACACACCCAATCTCGACGCCCTCATTGGATTCATCACCAACAACCTGAAGAGGTTATAATTACAAGAAGACATCCACGTCATCATGGCTCAGAGTCCACTATGTCTTCAGGTTCGGGTGAACAACCCGAACCTGAAAGCATACAACACCGTCCACGTACATGGATCATCGTTCAACCCATCAACCCCTTCCACCCACCACCAAGAAGGGAAAGTCCCAATCCTGTTATGCCACGTGTCATGGATTCCAGAGATTACTACTTAGGACCGGGTTTAAATGAATTGATTGAACAGTTGACGGAGAACGACCGGCAGGGACCGGCGCCGGTGCCGGAGGGGGTGATTAACGGGATACCAACAGTGAAGATATTGAGCACGCATCTGAAGGAGAATTCGCAGTGTCCTGTTTGTCAAGAAGAGTTTGAAGTTGGTGGAGAAGCTAGGGAACTTCCATGCAAGCATATATATCATTCTGAATGTATTGTTCCTTGGCTTAGGCTTCATAATTCTTGTCCGGTGTGCCGCCACGAGGTGCCAGTGTCGGAGGCGGAAGAGGAGGAGGAGAGTGGTGGTGATGATGATGGTGGAGGAGGTAGGTTTAGGAGGTGCATGAGGTGGACACGTATAACTTCTATTTGGCCTTTTCATAGAAGGGTTCATCCTGATACTACTACTTCTTCAAGGGGTGATAATTAA 957 0.4765 MSLSPPRDRNNNEQQRTYQLYWCFQCNRMVRFSPSNSNPIICPRCFGQFVCEINIPWPRIVVDFTNHDPSPEAGLLEALSLMLEPPIRHTQSRRPHWIHHQQPEEVIITRRHPRHHGSESTMSSGSGEQPEPESIQHRPRTWIIVQPINPFHPPPRRESPNPVMPRVMDSRDYYLGPGLNELIEQLTENDRQGPAPVPEGVINGIPTVKILSTHLKENSQCPVCQEEFEVGGEARELPCKHIYHSECIVPWLRLHNSCPVCRHEVPVSEAEEEEESGGDDDGGGGRFRRCMRWTRITSIWPFHRRVHPDTTTSSRGDN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0404 318 MobiDBLite consensus disorder prediction 108 135 - -
Lal4g0404 318 SUPERFAMILY RING/U-box 201 267 - -
Lal4g0404 318 SMART ring_2 221 261 IPR001841 -
Lal4g0404 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 268 IPR013083 -
Lal4g0404 318 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Lal4g0404 318 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Lal4g0404 318 MobiDBLite consensus disorder prediction 266 285 - -
Lal4g0404 318 Pfam Ring finger domain 220 262 IPR001841 -
Lal4g0404 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 286 - -
Lal4g0404 318 CDD RING-H2_RNF126_like 220 262 - -
Lal4g0404 318 PANTHER - 10 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0404 Lal-Chr4 2813678 2814634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0404 193 302 C3H Transcription Factor Family AT1G68180 43.363 7.41e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0404 K11982 - gmx:100787399 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0404 4 2813678 2814634 Lal4g0404 4 2813678 2814634 ECH