Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0395 ATGGATCGCAAGAAACTCCGTCGTAAACCCAAGTTAGAGCGTCGCAATGCTGTTAAATACTCCGATTACGACGCCGTTTCACCTTCTTCATCCTTCGACGACTCTTCCGCTTCTCTCTACACTAGTTCGATCGATTTCAACGACCGAACCAGCTTCCGAATCGATGGAATCGAAGGCGAGTTCGATCGAATTTGCAAGAGTTTGGGTTTATCCGGTCCAGAAGACTTTTCTATCCCCGCTACGGCGTGGGAGGAGATGAAGGTTCATTTCAATTCTGATATTCTATATAAGTTGAATATTATTGAGAATGACGAAAAAATAGTTGTAGTAGTAGGAGAAGAAGAAACGAAGGAAATTGAGAGTGAAATGGTTGAGGAATGTGAAAATAGGGTTAGAGATGATGAACCTGGTGAGATTAGTGGCTGCTGCGTTGGAGGAATTAAGGGGATTCGTCCATTGATGCTTAAGCCACCGCCGGGGATGAGGGTTCAGGTGGTTGATAGCACGTGCTCCACGTGGGACCTTTTGAGAGAGTTTGCTCCACAAGGTGAAGAACAGAGAGAAGTGGATAAAGAGAAAGAAGAAGTTGGTGTGGAGAGAGAAGAGGAAGAGGATAATGAAGAGATGATAGGAGAGGTTATTAGTGATGAGCTCTCAAGTGAGGATGATTCTTCTAGCACTAACACTAACACTGACGCTGATCCTAGGTCCAATAACATATCTCCTAATGCCAGAATCAAGCGTACTATTACCACCGGGAAATGGCAGAAAGGCGAGCTTTTGGGGCGGGGTTCGTTTGGCTCTGTTTATGAAGGAATTTCTGAAGATGGTTTCTTTTTTGCTGTGAAAGAAGTTTCACTGCTTGATCAAGGGAGTCAGGGAAAGCAAAGTGTCTATCAACTGGAGCAGGAGATTGCACTTTTGAGTCAGTTTGAGCATGAGAACATAGTCCAATACTATGACACAGAAATGGATGAATCAAAGCTGTATATCTTTCTTGAGCTTGTAACTAAAGGCTCCCTTGCAAGACTCTACCAGAGATATACTCTTCGAGACTCTCAGGTATCTGCCTATACAAGACAGATTCTGCATGGTTTGAAGTATCTTCATGATCGAAATGTAGTTCACAGGGATATTAAATGTGCTAATATATTGGTGGATGCAAATGGATTTGTGAAGCTTGCAGATTTTGGATTGGCCAAGGCAACCAAATTGAATGATGTTAAATCATGCAAGGGAACAGCATTCTGGATGGCCCCTGAGGTTGTAAAAGGAAAGCACCAAGGTTATGGGCTTCCAGCTGATATGTGGAGTTTGGGATGCACTGTGCTGGAGATGTTAACTGGCCAAATTCCATACTTCGAATTGGAATGTATGCAAGCATTATTTAGAATTGGAAAAGGCGAGCAGCCTCCTATTCCTGATTCTCTTTCAAGAGATGCACATGATTTCATCACACAGTGTCTTCAAGTTAATCCAGATGAACGTCCCTCTGCTGCTCAACTCTTAAACCATCCATTTGTCCAAAGACCAGTATCCCAGTCCTCTGGTTCTTCATTTCCAAATCCAAATATTCCTGGCAGAAAGGGTTAA 1593 0.4313 MDRKKLRRKPKLERRNAVKYSDYDAVSPSSSFDDSSASLYTSSIDFNDRTSFRIDGIEGEFDRICKSLGLSGPEDFSIPATAWEEMKVHFNSDILYKLNIIENDEKIVVVVGEEETKEIESEMVEECENRVRDDEPGEISGCCVGGIKGIRPLMLKPPPGMRVQVVDSTCSTWDLLREFAPQGEEQREVDKEKEEVGVEREEEEDNEEMIGEVISDELSSEDDSSSTNTNTDADPRSNNISPNARIKRTITTGKWQKGELLGRGSFGSVYEGISEDGFFFAVKEVSLLDQGSQGKQSVYQLEQEIALLSQFEHENIVQYYDTEMDESKLYIFLELVTKGSLARLYQRYTLRDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDANGFVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVKGKHQGYGLPADMWSLGCTVLEMLTGQIPYFELECMQALFRIGKGEQPPIPDSLSRDAHDFITQCLQVNPDERPSAAQLLNHPFVQRPVSQSSGSSFPNPNIPGRKG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0395 530 MobiDBLite consensus disorder prediction 220 245 - -
Lal4g0395 530 MobiDBLite consensus disorder prediction 181 196 - -
Lal4g0395 530 SUPERFAMILY Protein kinase-like (PK-like) 240 512 IPR011009 -
Lal4g0395 530 Gene3D Transferase(Phosphotransferase) domain 1 252 523 - -
Lal4g0395 530 ProSiteProfiles Protein kinase domain profile. 255 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0395 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Lal4g0395 530 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
Lal4g0395 530 SMART serkin_6 255 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0395 530 MobiDBLite consensus disorder prediction 181 245 - -
Lal4g0395 530 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 47 521 - -
Lal4g0395 530 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 47 521 - -
Lal4g0395 530 MobiDBLite consensus disorder prediction 197 219 - -
Lal4g0395 530 MobiDBLite consensus disorder prediction 510 530 - -
Lal4g0395 530 Pfam Protein kinase domain 256 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0395 Lal-Chr4 2712062 2717060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0395 147 512 MAP Kinase Kinase Kinase AT4G08500 60.753 7.43e-147 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal4g0395 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0395 K13414 - gmx:100819999 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0395 4 2712062 2717060 Lal4g0395 4 2712062 2717060 ECH
Lal6g0505 6 3242989 3249451 Lal4g0395 4 2712062 2717060 PCT
Lal4g0395 4 2712062 2717060 Lal6g0505 6 3242989 3249451 PCT