Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0392 ATGGTTCAGTTACTGTGCACGTTTTTGTTGCCGGCGATGAATGGTTGCCGATCTCACCGGCGGACGAATATGAGGGATTTGGAAAATCTATCCGCCGAGGAGACGTCGTGTACGTTTCCGGTGGATTTTCCGGCGTACTTGCCGGAAATCGCTGAGGACTCCTCCGCAAAATTCGGAATAGATTTTTTCTCGCAGGCTCGGAAAGCGCTGAGTGAGCGCTCTCCTTTCGATGTTGTTGCTGGAGAAACGTCGACTTCAGCTGCGGCGGTTACCCTGCCGAGTGAGTTGGCGAATTTGTTGAACCGCCACGGTGATAAGCGTTGGCGCCACAAGAAGTCTTCTCACGCCAGTGGTGGCGGTGAGAAGAAGAAGAAATCGTCTAGGGCGGGCGAGAAGGCGCATGGCTCCAACATTTGGACTGAGATGGAAGTATACTTCAGGGACTTGACATTGTCTGATATTGATACCTTGGCCGAGGCTTCCTCGCTTTGTAATTTAACTTATAGTGAATGTTTTTCGATTCCGCGATTGGGAAATGCTCTGAAATTTGATGCAGTGAGTAGTAATGATGAGAAAATTGCTGTTCCGACATTCAATCTAGGTAGTAATGACAATAAGAAAAATGTTGTTTGTGGGAATGAGAAAAATGCTGATGAAGATGCAATTGTTGCGGATGTGAAAATTGAAGATGGTTTTGTGGGAATTGAGTCGGACAATGTTGCTGCTGATACAGTTTCACCTCTGGATGATGAGACTCATGCTAATTCTGATACTTGTGATAGTTTAGAGTGGCTTTTAGGTTGTAGGAATAAGATTTCCCTAACTTCTGAGCGCCCTTCGAAGAAAAGGAAACTTTTGGGTGGTGATGTTGGTTTAGAGAAAGTTGCAATGGCTTGTGATGTGGGGCAACCTTTTTGTGATTATTGCAGCAGGGGAGACACTGGCAATGATTCCAATCAGTTAATCTCCTGCACTTCTTGTAAAGTTGTGGTTCATCAAAAGTGCTATGGTGTGCAAGATAATGCAAACGAGTCTTGGTTGTGTTCCTGGTGTAAGCAAAAGACTGATATTGATGAGTTGGATAATCATTGTGTGCTTTGCCCAAAGAAGGGTGGTGCTTTAAAACCTGTTAATGGCAGCATTGGAAATGTTGGGTCTGTCCAGTTTGCGCACTTGTTTTGCGGTCTGTGGATGCCTGAGGTCTATATAGATGATTTGAAGAAGATGGAACCTGTTATGAATGTGGGGGAAATCAAGGAAAACCGGTGGAAATTAGTTTGTAATGTTTGCAAAGTGAAATGTGGTGCATGTGTTCGATGTAGCCATGGAACTTGCAGGGCTTCTTTCCATCCCTTATGTGCAAGGGAAGCTAGACATAGGATGGAAGTTTGGGCAAGGCATGGTGATGATGACGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAAGAGAACAGAAGCATCTCTCCATCAAGAGGCTCTGTTGCTATTGGTGAATTATCTGAAGCCAATGACCCTCCAGCGACATTACCACTGAACAGTACACTCAATTTGAAAATTGGTGTCCAGAATGGAGACGTAGTATCTGATAGTAGCCCAGACAAGTTAAACCATACCGAACCCCAAGATGGAGGATTGTCTGATTGTAGGCTAAGTGCTCATGGCCTGTTGGGATGCGGTGCTGTGAAGCAACATAATATTGGAGTGGTAGGGAAGACCAATGAGAACGTTGACGCATCTGACTCTCTCACTTTTGCACTCATTTTGAAGAAGTTGATAGATCGTGGAAAAGTTGATGCAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACAGAAAATATCAATGAAGCTTATATTGCCCCCGATGTGCGAGACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTACTGCATTTCATAAAGGGGTAAAAGTCAAAATTAAACCAGCCAATGCATCTACTGATGAAAGTGGAGCTGCCGATGGTTCCGAGAATTTACCGAAATCGGATTCAGGTTTGTTGGATCCTATTGCTGTTAAGTCCGTACCACAAAGGAGAAGAACTGTCAGCAACATTAGGATTTTGAAGGATAAAATGATATATTTGTCCAACGGGGTTACTAGTAAGAATGGGATGCCAGTAGACAAGATCAGCGTAGATCAGACTGACCACGAAAATCCAGGAATTTCCAATGAAGCATCAGTTCCTGGTGCAACCGAAATGAATTTAACCAAGTCTGAGGATTTTTGTCCAGCAGTTCAAGACAGTGCTGATATATCCTTCAAATCAAGCATATCTGGATGTGTTTTAGATGAAGAGTCTACCACTTGTTTGCAGAACTCTTCTATGCTTTCTGATCAGCAATGTCCTCTTCATCCTGCTTCAAAACCACCTGATTCTGGTTTCATAAAGAAGGAAGTGATCTCTTGTTATGTTCACCCATACATCAAAAAGACGTTGCAGCAAGTTCGTGATGGTGTGCCATTGGACGACATTATATGTCCAAGAGAGGAGGGGAAGTCTTCTGTTAAATTCTCAGGGGCCAGTGACTGCTCAAGTAGCCATAATCAGCAATTACCTTGTGTTGACTTTTCCAAGCCTGGTCAAGTAAATAAGGACCAATTGGCTAGGGCTAGAAAAATGGAACTTCTGGAATTTTCTCCAGAAGATGAAGTGGAGGGGGAACTAATATATTACCAGCATAGATTATTCCAAGATAGAGTTGCAAAGAAGAGGCTAACTGATAACTTAATTCACAATATTGTCAAGAGATTGCCACAAGAGATTGATATGGCACATCAGCGAAGATGGGACGCTGTGATTGTTAACCGATATCTGCGTGATCTGAAGGAGGCAAAGAAGCAGGGCAGAAAAGAAAGAAGGCATAAGGAAGCACATGCAGTGCTGGCTGCTGCAACTGCTGCTGCTGCAGCATCTACTAGGGTTTCTTCTTTCCGAAAAGACACCTTAGATGAATCTATGCAAAAGGAGAATTTGTTAAAGTTGGATGCTTTAAGTGGGAGGAATGGTGCTTCTTCTCAACCAATGCCACGAGTCAAAGAGACACTTTCAAGAGTAGCTGTCACAAGAACTTCATCAGAGAAATATTCGGATTTTGGCCTGTCAACCTCAAATTTCTCCAAGGAACAGCCTAAATCATGTAATATCTGCAGACGACCTGAGACTATGTTAAACCCTATTCTAGTCTGCTCTGGTTGCAAGGTTGCAGTGCACTTGGATTGCTATCGTAGTGTGAAAGAAACAATGGGTCCATGGTACTGTGAATTATGTGAAGATTTATCATCTAGAAGCTCTGCAACATGTACTGTCAATTTCTGGGAGAAGCCTTATTTTGTTGTAGAATGTGCTCTCTGCGGTGGTACTACCGGAGCTTTCAGGAGGTCTTCTGATGGCCAATGGGTTCATGCTTTTTGTGCCGAGTGGGTGTTTGAGTCAACATTCAGAAGAGGACAAATAAATAGTGTCGAAGGAGTGGAGACTGTGTTGAAGGGAACTGATATTTGCTGCATCTGCTGCCGTAAGCATGGTGTATGCATGAAGTGTTGCTACGGCCATTGTCGAACTACATTCCACCCATCCTGTGCTAGAAGTGCTGGCTGGTACATGAATGTCAGGACTGCTGGTGGCAAGCTGCAACACAAGGCTTACTGTGAAAAGCATAGTTTGGAGCAGAAGGAAAAGGCTGATAAACAAAAATATGGAATTGAAGAGTTTAAAAGAATGAAGCAAATTAGGGTTGAACTAGAGAGGTTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAACTGATTCTATGCTCACACGACAAACTTGCCTTCGAAAGGGATCATGTTGCTAGATCTATGATGGTTCATAGCCCTTTGGCTCTTCCAGATGGCAGTTCAGGATCAGCTGCGACGTCCCTCATAGGGAACACTGAGGGATATAGATCATGCAGTGAAGCTGTCCAACGATCAGATGATGTGACTGTGGACAGCTCAGCTTCTGCCAAGCACCGTGTCAGAGTTGCTGTATCCATGGATACAGACCCAAAAGTGGATGATGGCTGCTCAACCTCACAAAGGCACTATGACCAGAAGATACCGGAAAAGTTGCAATTTTCTGGCAAGCAGATTCCTCGTAGAGCTTTTGCCACATTGCATTATCATTCCGATGAGGGTGGAAGGAGATCCAAATCTAGGAAGCATGCAGAGACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCCATGAAAAATTCAAGGTTACCTAAAGGATATGCATATGTTCCTGCTGATTGCTTGTCAAATGACAAGCACTCTAAGGAGGATTTATATGCTAGTGAACCAGTGGAATGA 4401 0.4349 MVQLLCTFLLPAMNGCRSHRRTNMRDLENLSAEETSCTFPVDFPAYLPEIAEDSSAKFGIDFFSQARKALSERSPFDVVAGETSTSAAAVTLPSELANLLNRHGDKRWRHKKSSHASGGGEKKKKSSRAGEKAHGSNIWTEMEVYFRDLTLSDIDTLAEASSLCNLTYSECFSIPRLGNALKFDAVSSNDEKIAVPTFNLGSNDNKKNVVCGNEKNADEDAIVADVKIEDGFVGIESDNVAADTVSPLDDETHANSDTCDSLEWLLGCRNKISLTSERPSKKRKLLGGDVGLEKVAMACDVGQPFCDYCSRGDTGNDSNQLISCTSCKVVVHQKCYGVQDNANESWLCSWCKQKTDIDELDNHCVLCPKKGGALKPVNGSIGNVGSVQFAHLFCGLWMPEVYIDDLKKMEPVMNVGEIKENRWKLVCNVCKVKCGACVRCSHGTCRASFHPLCAREARHRMEVWARHGDDDVELRAFCLKHSDLQENRSISPSRGSVAIGELSEANDPPATLPLNSTLNLKIGVQNGDVVSDSSPDKLNHTEPQDGGLSDCRLSAHGLLGCGAVKQHNIGVVGKTNENVDASDSLTFALILKKLIDRGKVDAKDVALEIGISPDTLTENINEAYIAPDVRDKIVNWLKAHVYTTAFHKGVKVKIKPANASTDESGAADGSENLPKSDSGLLDPIAVKSVPQRRRTVSNIRILKDKMIYLSNGVTSKNGMPVDKISVDQTDHENPGISNEASVPGATEMNLTKSEDFCPAVQDSADISFKSSISGCVLDEESTTCLQNSSMLSDQQCPLHPASKPPDSGFIKKEVISCYVHPYIKKTLQQVRDGVPLDDIICPREEGKSSVKFSGASDCSSSHNQQLPCVDFSKPGQVNKDQLARARKMELLEFSPEDEVEGELIYYQHRLFQDRVAKKRLTDNLIHNIVKRLPQEIDMAHQRRWDAVIVNRYLRDLKEAKKQGRKERRHKEAHAVLAAATAAAAASTRVSSFRKDTLDESMQKENLLKLDALSGRNGASSQPMPRVKETLSRVAVTRTSSEKYSDFGLSTSNFSKEQPKSCNICRRPETMLNPILVCSGCKVAVHLDCYRSVKETMGPWYCELCEDLSSRSSATCTVNFWEKPYFVVECALCGGTTGAFRRSSDGQWVHAFCAEWVFESTFRRGQINSVEGVETVLKGTDICCICCRKHGVCMKCCYGHCRTTFHPSCARSAGWYMNVRTAGGKLQHKAYCEKHSLEQKEKADKQKYGIEEFKRMKQIRVELERLRLLCERIVKREKIKRELILCSHDKLAFERDHVARSMMVHSPLALPDGSSGSAATSLIGNTEGYRSCSEAVQRSDDVTVDSSASAKHRVRVAVSMDTDPKVDDGCSTSQRHYDQKIPEKLQFSGKQIPRRAFATLHYHSDEGGRRSKSRKHAETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKHSKEDLYASEPVE 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0392 1466 MobiDBLite consensus disorder prediction 1446 1466 - -
Lal4g0392 1466 MobiDBLite consensus disorder prediction 660 679 - -
Lal4g0392 1466 SUPERFAMILY FYVE/PHD zinc finger 291 354 IPR011011 -
Lal4g0392 1466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1126 1236 IPR013083 -
Lal4g0392 1466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 484 IPR013083 -
Lal4g0392 1466 Pfam PHD-zinc-finger like domain 363 481 - -
Lal4g0392 1466 Pfam PHD-zinc-finger like domain 1127 1234 - -
Lal4g0392 1466 CDD ePHD 1129 1234 - -
Lal4g0392 1466 SMART PHD_3 1182 1235 IPR001965 -
Lal4g0392 1466 SMART PHD_3 305 352 IPR001965 -
Lal4g0392 1466 SMART PHD_3 1060 1105 IPR001965 -
Lal4g0392 1466 SMART PHD_3 426 482 IPR001965 -
Lal4g0392 1466 ProSitePatterns Zinc finger PHD-type signature. 306 351 IPR019786 -
Lal4g0392 1466 ProSiteProfiles Zinc finger PHD-type profile. 1058 1107 IPR019787 -
Lal4g0392 1466 ProSiteProfiles Extended PHD (ePHD) domain profile. 1126 1235 IPR034732 -
Lal4g0392 1466 MobiDBLite consensus disorder prediction 104 118 - -
Lal4g0392 1466 MobiDBLite consensus disorder prediction 103 134 - -
Lal4g0392 1466 SUPERFAMILY FYVE/PHD zinc finger 1049 1105 IPR011011 -
Lal4g0392 1466 ProSitePatterns Zinc finger PHD-type signature. 1061 1104 IPR019786 -
Lal4g0392 1466 Pfam PHD-finger 1072 1105 - -
Lal4g0392 1466 Pfam PHD-finger 319 352 - -
Lal4g0392 1466 ProSiteProfiles Extended PHD (ePHD) domain profile. 361 482 IPR034732 -
Lal4g0392 1466 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 130 494 - -
Lal4g0392 1466 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 846 1457 - -
Lal4g0392 1466 Coils Coil 1255 1275 - -
Lal4g0392 1466 MobiDBLite consensus disorder prediction 1450 1466 - -
Lal4g0392 1466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 357 IPR013083 -
Lal4g0392 1466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1048 1112 IPR013083 -
Lal4g0392 1466 ProSiteProfiles Zinc finger PHD-type profile. 303 354 IPR019787 -
Lal4g0392 1466 PANTHER PHD FINGER PROTEINS 130 494 - -
Lal4g0392 1466 PANTHER PHD FINGER PROTEINS 846 1457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0392 Lal-Chr4 2691751 2702923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0392 305 498 C2H2 Transcription Factor Family AT3G14740 30.808 8.49e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal4g0392 zf-HC5HC2H_2 2e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0392 - - lang:109327024 2284.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0392 4 2691751 2702923 Lal4g0392 4 2691751 2702923 ECH
Lal17g0446 17 3033314 3044984 Lal4g0392 4 2691751 2702923 LSH