Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0388 ATGCGGCGTCCACCGCCGTCGATTCCTCCTCCTCCGCCGTCTCATCCGTCGCAACCTTCCCCAATTGACTCCAAAATTTGGCGTGCTTGTGCCGGAACTTCCGTTAACATCCCCGTTATCAATTCTAGGGTTTACTATTTTCCTGAAGGTCATCTTGATCAAGCTTCATCAACTCCTAAACAACTTTCTCGTAATCTCTATTCCACTCCCTTCGTTCTTTGTTGCGTTGTTGATGTTCAATTCTTCGCTGATCATAACACTGATGAGGTTTTCGTTAAACTCGTTCTTCAACCTATTAACCGTAATTCTGATTTTCAGAATTATCTCCTTCGTACTCCTCCTCCACCGGTTATAGCCGGTGATGGTAGTAGTAGTAGTAGTAGTAATGGTAGTAGTTCCGGTGATGAAAACGCTGTCGATTCGTTCGCTAAGATTTTGACTCCGTCTGATGCTAATAATGGTGGTGGGTTCTCTGTTCCGAGGTACTGTGCTGATTCGATTTTCCCGCCGCTGAATTTCAATATGGAGGATCCGCCGTTTCAGAATTTGAGGTTCAATGATTTGCATGGAAATGTGTGGGAGTTTCGCCACATTTACCGTGGGACGCCCCGCCGTCACTTGCTCACCACTGGCTGGAGCAAGTTTGTTAACTTCAAGAACATTGTCGCGGGGGACTCGGTGGTTTTCATGAAGAACACGAAAGGGGAGTTGTTTGCTGGAATTCGTCGAGCAAAAAGGACTTCCACTAGGAGTTGCGGCCGAGAAGGCAGTGGCACAGATTGGTCTGCGATGATGCTCGCTGTTGGTGGTGCAAGGAAGAGGGATGTGGACGAGGAGAAGAAGCAGGAGGACAAGGTTGTGAAGGCGGGGTTTTCAAGGAGCGGGAAGGGGAAATTGGCGCCGGAGAAGGTTGCTGAGGCTGCGGAACTGGCAGCGCAAGGAATGCCGTTTGAGGTTGTGTATTATCCATGTGCTGGGTGGTCAGATTTTGTGGTGAAGGCAGAGCTTGTGGATGCAGCGATGATGATAATGTGGAGCCCTGGAATGAGAGTGAAGATGGATGTGGATACTGAGGATTCGTCTAGGATGGGCTGGTTTCAGGGCACAGTGTCTGCTGTGTGTGCTCCTGAGAATGGGCTGTGGCGGGGTTCTCCTTGGCATAGGATTCAGGTTGCATGGGATGAACCTGAAGTCTTGCAGAATGCAAAGTTTGTCAGCCCTTGGGAGGTTGAACCTGTAAACGCCACACCTACACTTCGCATAGCATTGCCCTTAACCAAAAGGTTTAGAGCCGCTCAGGGTTCTGTGGGTTTAACTGATGGATTGGGAGACCCTTTCTTTCCTATTACAGGATACACTAATTCAACAATGGGACAGCTTAATCAAACATTGTCGAGTTATGGTACATTTCCTGCTAGCATGCAGGGAGCCAGGCATGATCTATTTTCTACAACTGTTGCTTCCAATTTTTCTAGTGATATGGGTCATCTGTGTTTGGGTAATTCCTCTGGCAACAACCCAAGGTCGAAAAATTTGTCAACAGAGCTAAGTATTGGTAGTTCTCAATCTGACAACTTGTCACCAGATAGCCAGTGTAGTTTGCATTCCTTTGGTACAGAATGTGTTGGGACCCACAACTGCAATTCAACGAAACCTGGGTCTGGTTCAATTCAGCTATTCGGTACCACCATTGAAGCAAAACAGCCTGTTGAAAGTGTTTTGCATCTTATTGGTTGCACAGGAAATGATGGCTGTAAGTGTCACAATGAAATTAAAGGCATGGACAATCTGGAACAATCTTTGGCTTACTCAAAAATGCTGCTGAACAGGCTTGATGGCCCTGATGATGACAGACATTATTTGTGA 1866 0.4705 MRRPPPSIPPPPPSHPSQPSPIDSKIWRACAGTSVNIPVINSRVYYFPEGHLDQASSTPKQLSRNLYSTPFVLCCVVDVQFFADHNTDEVFVKLVLQPINRNSDFQNYLLRTPPPPVIAGDGSSSSSSNGSSSGDENAVDSFAKILTPSDANNGGGFSVPRYCADSIFPPLNFNMEDPPFQNLRFNDLHGNVWEFRHIYRGTPRRHLLTTGWSKFVNFKNIVAGDSVVFMKNTKGELFAGIRRAKRTSTRSCGREGSGTDWSAMMLAVGGARKRDVDEEKKQEDKVVKAGFSRSGKGKLAPEKVAEAAELAAQGMPFEVVYYPCAGWSDFVVKAELVDAAMMIMWSPGMRVKMDVDTEDSSRMGWFQGTVSAVCAPENGLWRGSPWHRIQVAWDEPEVLQNAKFVSPWEVEPVNATPTLRIALPLTKRFRAAQGSVGLTDGLGDPFFPITGYTNSTMGQLNQTLSSYGTFPASMQGARHDLFSTTVASNFSSDMGHLCLGNSSGNNPRSKNLSTELSIGSSQSDNLSPDSQCSLHSFGTECVGTHNCNSTKPGSGSIQLFGTTIEAKQPVESVLHLIGCTGNDGCKCHNEIKGMDNLEQSLAYSKMLLNRLDGPDDDRHYL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0388 621 Pfam Auxin response factor 307 389 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal4g0388 621 SUPERFAMILY DNA-binding pseudobarrel domain 138 249 IPR015300 -
Lal4g0388 621 MobiDBLite consensus disorder prediction 501 524 - -
Lal4g0388 621 SMART B3_2 142 245 IPR003340 GO:0003677
Lal4g0388 621 Gene3D - 139 245 IPR015300 -
Lal4g0388 621 PANTHER AUXIN RESPONSE FACTOR 17 613 - -
Lal4g0388 621 MobiDBLite consensus disorder prediction 1 19 - -
Lal4g0388 621 CDD B3_DNA 141 243 IPR003340 GO:0003677
Lal4g0388 621 Pfam B3 DNA binding domain 142 244 IPR003340 GO:0003677
Lal4g0388 621 Gene3D - 345 418 - -
Lal4g0388 621 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 613 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal4g0388 621 MobiDBLite consensus disorder prediction 116 136 - -
Lal4g0388 621 MobiDBLite consensus disorder prediction 1 22 - -
Lal4g0388 621 MobiDBLite consensus disorder prediction 119 136 - -
Lal4g0388 621 ProSiteProfiles B3 DNA-binding domain profile. 142 245 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0388 Lal-Chr4 2663919 2667664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0388 22 586 B3 DNA Binding Superfamily AT1G77850 45.709 4.05e-151 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal4g0388 B3 1.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0388 - - lang:109326149 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0388 4 2663919 2667664 Lal4g0388 4 2663919 2667664 ECH
Lal21g0504 21 3601912 3606395 Lal4g0388 4 2663919 2667664 LSH