Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0376 ATGGAATCTATGATGGATTTCTATAGCAGCATGTCTCAGCTTCACTCAGATCCAATTAGAGGTGAGTTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCCAAACTTCAACCCCATTATCCCCTTTCTCAAACTCATCTCAAACTTCTACTTCTTATTCTTATTCTCCTTCTCCCACTTACTTCAACTCCTCTTCTTTTCTCCCTATTCATCAACCAATTGATTTCTCATCCAATAGCCAAAATTTCATTGGCTTTGGTCAATCAACTTCTTCTGTTCTTGGCCTCAATCACTTAACCCCATCTCAGATGAATCAGATACAGACTCAGATCCACCTTCAGAGTATGCAAAACTTTCACCACAACACCAGCACTGCCCTTAGTTTCCTTAGTCCTAAGCCCATCCTAATGAAGCACATGGGTGCACCACCAAAACCCAATAAGCTTTATAGAGGGGTGAGGCAAAGGCATTGGGGAAAGTGGGTGGCTGAGATACGACTCCCCAAAAATAGAACAAGGCTTTGGCTTGGTACCTTTGACACAGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCTGCTTATAAGCTCAGAGGTGACTTTGCTAGGCTCAACTTTCCAAACCTTAAGCACCAAGGTTCATGTGTTGGTGGTGAGTACAAGCCTCTTCATTCATCTGTTGATGCCAAGCTTCAAGCTATTTGTGAAGGCTTAGCTGATATGCAGAAAAAACAAGGGAATAATAAGAAGTCTGAGAAGGTAACAAAAACCTCTTCTAAGAGGTCAAAATCAAAACTTGGTGGTGGGTCTTCCAAGGTGGTGGCTCAGCCAGAAGATGTGAAGAAGTTAGATAGCACTTGTGAGGAAACTTTCTCTTTGTCTTCAGTGATGACAGAGAGTGAGGGATCTGACAGTTCTTCACCACTTTCAGATCTTACCTTTGCTGATGTTAATGAGCCTCAGTGGGAAGTTGCTTCTGATTGTTTTAATCTTCAAAAGTACCCTTCTTATGAGATTGATTGGGATTCTCTGTGA 1035 0.4184 MESMMDFYSSMSQLHSDPIRGELMEVLEPFMKSPSQTSTPLSPFSNSSQTSTSYSYSPSPTYFNSSSFLPIHQPIDFSSNSQNFIGFGQSTSSVLGLNHLTPSQMNQIQTQIHLQSMQNFHHNTSTALSFLSPKPILMKHMGAPPKPNKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCVGGEYKPLHSSVDAKLQAICEGLADMQKKQGNNKKSEKVTKTSSKRSKSKLGGGSSKVVAQPEDVKKLDSTCEETFSLSSVMTESEGSDSSSPLSDLTFADVNEPQWEVASDCFNLQKYPSYEIDWDSL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0376 344 MobiDBLite consensus disorder prediction 243 259 - -
Lal4g0376 344 SUPERFAMILY DNA-binding domain 150 207 IPR016177 GO:0003677
Lal4g0376 344 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 343 - -
Lal4g0376 344 SMART rav1_2 150 213 IPR001471 GO:0003700|GO:0006355
Lal4g0376 344 CDD AP2 149 209 IPR001471 GO:0003700|GO:0006355
Lal4g0376 344 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700|GO:0006355
Lal4g0376 344 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700|GO:0006355
Lal4g0376 344 MobiDBLite consensus disorder prediction 242 279 - -
Lal4g0376 344 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 343 - -
Lal4g0376 344 ProSiteProfiles AP2/ERF domain profile. 150 207 IPR001471 GO:0003700|GO:0006355
Lal4g0376 344 Gene3D AP2/ERF domain 150 208 IPR036955 GO:0003700|GO:0006355
Lal4g0376 344 MobiDBLite consensus disorder prediction 32 52 - -
Lal4g0376 344 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0376 Lal-Chr4 2565598 2566632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0376 1 344 AP2-EREBP Transcription Factor Family AT1G78080 50.689 9.96e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal4g0376 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0376 K09286 - gmx:100800478 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0376 4 2565598 2566632 Lal4g0376 4 2565598 2566632 ECH
Lal17g0423 17 2851831 2853454 Lal4g0376 4 2565598 2566632 LSH
Lal21g0491 21 3493589 3494635 Lal4g0376 4 2565598 2566632 LSH
Lal22g0451 22 2950290 2952599 Lal4g0376 4 2565598 2566632 PCT
Lal6g0485 6 3102309 3104129 Lal4g0376 4 2565598 2566632 PCT
Lal4g0376 4 2565598 2566632 Lal22g0451 22 2950290 2952599 PCT
Lal4g0376 4 2565598 2566632 Lal6g0485 6 3102309 3104129 PCT