Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0368 ATGGGAAGGTCCCCATGCTGCGATGAGAGTGGCCTTAAGAAAGGACCATGGACTTCTGAAGAAGATCAAAAGCTAATCCAACACATTGAAAAACATGGCCATGGAAGTTGGAGAGCACTTCCTAAGCTAGCTGGTCTTAACAGGTGTGGAAAAAGTTGCAGGCTTAGGTGGACCAACTATTTAAGGCCTGATATCAAAAGGGGAAAGTTTTCACAAGATGAGGAGCAAACAATCCTGCATCTCCATTCCATTCTTGGAAACAAGTGGTCAGCAATTGCAACCCATCTTCCAGGAAGAACCGATAATGAGATCAAGAATTTCTGGAACACTCATTTAAGGAAAAAGTTAATTCAGATGGGTTTTGATCCAATGACTCACCAACCAAGAACAGACCTTGTTTCCACCTTGCCATATTTGCTAGCTTTGGCCAACATGACAGACATCATGGATCATAATCAGTCATTGGATGAACATGCTATGAGGTTACAAGCAGAAGCAGTTCAGCTAGCCAAGTTTCAATACCTTCATTATTTACTACAATCTTCAAATTCCTTAAGTACCAATTCCTATGAACAAAATGCCATTACAAACATGGAACCATCTTTTAGTATGTTAAACTCAACGAAAGAGAATCAAGTTATAGAGTTGCCACAACTGGGTAATGATAATCATGCACCCTCATTTTATGAAGGGATTATTGCTGGCTCTGGCTCCCAACCACTCTACCACCAAGGCAATATGGTATCTGACTTTTTAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAATGAGCAGGGCCAAGGTACTAACTATGCAATCAATATAAGTCAAGGGGATCATACTATATCTGATAATGACTCATCTTGGATTATTCCATCTCCTGCTCCATCATCTATTAATCCTCCAAATGCAACTAGTAATATTCCTGGAGATGCTAGTAGTAGAAGTTCTAGCTATGAGGGTGGAATCTCATCTTATTGGCCTGAGTTATTTTTTGAGGACCCCATTATCATGCATGAGTTATCTTAG 1038 0.3998 MGRSPCCDESGLKKGPWTSEEDQKLIQHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLRKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTDIMDHNQSLDEHAMRLQAEAVQLAKFQYLHYLLQSSNSLSTNSYEQNAITNMEPSFSMLNSTKENQVIELPQLGNDNHAPSFYEGIIAGSGSQPLYHQGNMVSDFLDPQVSFSSQSCLNNEQGQGTNYAINISQGDHTISDNDSSWIIPSPAPSSINPPNATSNIPGDASSRSSSYEGGISSYWPELFFEDPIIMHELS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0368 345 Gene3D - 69 116 - -
Lal4g0368 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal4g0368 345 CDD SANT 69 112 IPR001005 -
Lal4g0368 345 MobiDBLite consensus disorder prediction 286 322 - -
Lal4g0368 345 Gene3D - 11 67 - -
Lal4g0368 345 CDD SANT 16 61 IPR001005 -
Lal4g0368 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 330 - -
Lal4g0368 345 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 330 - -
Lal4g0368 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal4g0368 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal4g0368 345 SMART sant 13 63 IPR001005 -
Lal4g0368 345 SMART sant 66 114 IPR001005 -
Lal4g0368 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal4g0368 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal4g0368 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal4g0368 345 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0368 Lal-Chr4 2505310 2507194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0368 1 340 MYB Transcription Factor Family AT1G34670 53.784 7.50e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal4g0368 Myb_DNA-binding 3.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0368 K09422 - gmx:100782792 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0368 4 2505310 2507194 Lal4g0368 4 2505310 2507194 ECH
Lal17g0411 17 2765570 2767491 Lal4g0368 4 2505310 2507194 LSH
Lal21g0484 21 3444764 3446803 Lal4g0368 4 2505310 2507194 LSH