Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0353 ATGGTAATGGCGCTACGATTACAGCATCATCATCCATGGAATCCCTCACTTCACTTTTTCACACAACACCAATCCCATTATCAAAACTCTTTCTTATCACTTCACAATCATTCCATAACCAATTTATCCCTTTTCACAACCAAACAAACCCGTCCTCACTTCACCCTCAGATTCGCAACCACTTCCCAAAAAGAAGAAGAAACCCAACAAACTGAGACTGACGAATCCACTGAAGAGTTTTCTCAGACAAGGTTGCTTGCTCAGAACGTGCCTTGGACCAGTACCCATGAAGATATTCGCTCTTTGTTTGAGAAACATGGCAAAGTCCTTCAAGTCGAGCTTTCTATGCATAACAAGACCCGAAACAGGGGATTGGCGTTTGTTGAAATGGGTTCGCCCGAAGAGGCTCTCGAAGCTATGAAAAATCTCGAATTATCTGAGTTTGAGGGTCGCATAATAAAACTGAATTATGCTAAGCCAAAAAAGAAGAAAACCCCACCACCCACTGGCACTGCAGCACCAAAGCCAGAAGTATTATTTAACGTGTTTGTCGCGAACTTGTCGTATGAAGCGAGGTCTAAAGATCTGAAGGAGTTTTTTGAGTCAGGAAGTGGTAGTGGAAGTGTTGTTTCTGCAGAGGTAATATTCAATGAGAACCCTAGAAAGTCATCAGGTTATGGATTTGTTTCCTTCAAGTCCAAGAAACAAGCTGAGGAGGCTCTTTCTGAGTTTGAAGGAAAGATATTTATGGGAAGGCCAATCAGGGTGGAACGTAGTAACCGATTTGTTAAACTATCAGCAGAAGAGAGTGCAAAGTCTGAAGATGCATCATCTCCTGAGTTAAGTGTTAATGAGGCAGAAACAAACATAGCTGAGAATGGTGCATCTTCTGTGTTAAGTGTTAATGAGGCAGAAGTAAACATAGCTGACAAAGACGAGGCTGAACCGGATAAAGCTGATGATACCATTGCTTAA 975 0.4205 MVMALRLQHHHPWNPSLHFFTQHQSHYQNSFLSLHNHSITNLSLFTTKQTRPHFTLRFATTSQKEEETQQTETDESTEEFSQTRLLAQNVPWTSTHEDIRSLFEKHGKVLQVELSMHNKTRNRGLAFVEMGSPEEALEAMKNLELSEFEGRIIKLNYAKPKKKKTPPPTGTAAPKPEVLFNVFVANLSYEARSKDLKEFFESGSGSGSVVSAEVIFNENPRKSSGYGFVSFKSKKQAEEALSEFEGKIFMGRPIRVERSNRFVKLSAEESAKSEDASSPELSVNEAETNIAENGASSVLSVNEAEVNIADKDEAEPDKADDTIA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0353 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Lal4g0353 324 SUPERFAMILY RNA-binding domain, RBD 177 261 IPR035979 GO:0003676
Lal4g0353 324 MobiDBLite consensus disorder prediction 59 79 - -
Lal4g0353 324 MobiDBLite consensus disorder prediction 276 303 - -
Lal4g0353 324 PANTHER OS08G0483200 PROTEIN 9 287 - -
Lal4g0353 324 Gene3D - 48 164 IPR012677 -
Lal4g0353 324 CDD RRM_SF 89 156 - -
Lal4g0353 324 CDD RRM_SF 182 257 - -
Lal4g0353 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 261 IPR000504 GO:0003723
Lal4g0353 324 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 9 287 - -
Lal4g0353 324 MobiDBLite consensus disorder prediction 306 324 - -
Lal4g0353 324 Gene3D - 165 272 IPR012677 -
Lal4g0353 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 255 IPR000504 GO:0003723
Lal4g0353 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 153 IPR000504 GO:0003723
Lal4g0353 324 SMART rrm1_1 181 257 IPR000504 GO:0003723
Lal4g0353 324 SMART rrm1_1 84 156 IPR000504 GO:0003723
Lal4g0353 324 MobiDBLite consensus disorder prediction 267 324 - -
Lal4g0353 324 SUPERFAMILY RNA-binding domain, RBD 75 169 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0353 Lal-Chr4 2405194 2408806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0353 83 279 Eukaryotic Initiation Factors Gene Family AT3G16380 27.700 1.27e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0353 - - lang:109340717 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0353 4 2405194 2408806 Lal4g0353 4 2405194 2408806 ECH
Lal21g0468 21 3332525 3335154 Lal4g0353 4 2405194 2408806 LSH