Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0351 ATGGTTGACGAGTTTACGATCATAGTCATCACAGCCCTGATCTTAACATTCATCTTGTTGGGTGCTATTGCTATCTACACTCGCCGGTGCAGTGAGCGAAGGATGAGAGGAAGATTCGACCTCACGATTCCGATCGACGAAAGTAACCCCCGACGACGTGGATTAGACCCAGAGATCATCGAAACATTTCCAACTTTCATCTACTCCACCGTGAAGAGCCTTAAAATAGGGATGACCACGCTAGAATGCGCTGTGTGCTTAAACGAGTTTCAAGATGATGAAACACTGCGTTTGATCCCAGTTTGTAACCACGTTTTTCATCCTGAATGCGTTGATGGATGGTTGGTTCATCATTCAACTTGTCCTGTTTGCAGAGCTAACCTTGCTTCGATCATCGACGAAGTTATCTCCATTCAAATTCTGAACCATACCGAACCGGAACTGAACCCGGTCCAAGTCAATGAAGAGAACGATGGGAGTGTAAGAGAATCTCCTACGGTAATAAAGGAATCTCCAAAATTGAATATTAATAATTTGGTTCATCAAAACCGGTCACCTATATCAAGGGCAAAGGGGTTTAGCTTCAAGAATTTGTTCCCACGTTCTCACACGACGGGTCACTCGCTGGTTCAACTCGGTGAGAATGTGGAGAGGTTTACTTTGAGGTTGCCGGAAGAGGTGAGGAACCAATTGGTGACGAGAAAGTTAGGCAATACGAAGAGTTGGAGCGCCACGGTCACGCCTGAGAGTAGTGAGAGAAGAGGGCGTAGAACAAGGAGTATAGACATTGGTCGTAGAATGAGCTATATGGAACGGTTCACCCGGTCGGACCGGAAAGGATTTAATTGGATGGGTAAGGATGGTTCGACTAAGTCAACAAAGGGTACTGAATCTAATAAAGACGTGGGAGAACGATCTTTCGACCAACTAGTAGTTGCTAAGAAATGA 948 0.4536 MVDEFTIIVITALILTFILLGAIAIYTRRCSERRMRGRFDLTIPIDESNPRRRGLDPEIIETFPTFIYSTVKSLKIGMTTLECAVCLNEFQDDETLRLIPVCNHVFHPECVDGWLVHHSTCPVCRANLASIIDEVISIQILNHTEPELNPVQVNEENDGSVRESPTVIKESPKLNINNLVHQNRSPISRAKGFSFKNLFPRSHTTGHSLVQLGENVERFTLRLPEEVRNQLVTRKLGNTKSWSATVTPESSERRGRRTRSIDIGRRMSYMERFTRSDRKGFNWMGKDGSTKSTKGTESNKDVGERSFDQLVVAKK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0351 315 MobiDBLite consensus disorder prediction 293 315 - -
Lal4g0351 315 PANTHER RING-H2 FINGER PROTEIN ATL11 6 248 - -
Lal4g0351 315 PANTHER RING FINGER DOMAIN-CONTAINING 6 248 - -
Lal4g0351 315 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Lal4g0351 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 131 IPR013083 -
Lal4g0351 315 CDD RING-H2_PA-TM-RING 82 125 - -
Lal4g0351 315 MobiDBLite consensus disorder prediction 279 315 - -
Lal4g0351 315 Pfam Ring finger domain 82 125 IPR001841 -
Lal4g0351 315 SUPERFAMILY RING/U-box 77 131 - -
Lal4g0351 315 SMART ring_2 83 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0351 Lal-Chr4 2394070 2395017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0351 8 306 Rapid Response to Elicitors AT3G05200 40.125 2.14e-59 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0351 K10664 - jre:108987460 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0351 4 2394070 2395017 Lal4g0351 4 2394070 2395017 ECH
Lal17g0396 17 2659307 2660699 Lal4g0351 4 2394070 2395017 LSH
Lal6g0455 6 2898111 2899259 Lal4g0351 4 2394070 2395017 PCT
Lal4g0351 4 2394070 2395017 Lal6g0455 6 2898111 2899259 PCT