Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0342 ATGGAATTTGCCGAGCACGGAAACCAAATGCAAGAACCAATGGGTGTCCAAGTTCCGCCACCGGAACATGGCTCGCTTCAAAACTCCATTACGAACACAAATACTAGCGCCGCCGCTGAGATAGGTTCAACCACTGCCACACCTGGTCGCATAGTTAGACCCATTGTGGGGACAATCAGATACAGAGAATGTCAAAAGAACCATGCCACTAGTATTGGCGGCTACGCCGTTGATGGTTGCGGCGAGTTTTGGGGGGCAGGAGAAGAAGGCACTCTGAATGCAGTTATCTGCGCTGCCTGCAACTGTCACCGTAATTTCCATCGCAAGGAGGTCGTTGGCGCCATACTACCACAACCACAACCACAACCGGTGCAACACCACCACAACCAGTTCCCCCAACAGTACCAGCATGTTCCGCCACCACCTCCTTGTGCTGGTTACCACCTTTTAGCAGCTCCATCAGTTCCCCAACACCACCCCCTTGCTCTCCCCGCCGCATCAGACGGAGGGTACAACCATGAAGACAATGATATGTTGAACCCAAGCAATGGTGGCATAGCCAAGAAGAGGTTTAGAACAAAATTTACTCAGGAGCAGAAGGATAAGATGGTGGCATTTGCTGAAAAGCTTGGGTGGAAAATCCAGAAACATGATGCTGCTACTGTGGAACAATTCTGTGCTGAAACTGGTGTCAAGAGACAAGTTCTGAAGGTGTGGATGCACAACAACAAACACAACTTTGGCAAGAAAACTTAA 756 0.4987 MEFAEHGNQMQEPMGVQVPPPEHGSLQNSITNTNTSAAAEIGSTTATPGRIVRPIVGTIRYRECQKNHATSIGGYAVDGCGEFWGAGEEGTLNAVICAACNCHRNFHRKEVVGAILPQPQPQPVQHHHNQFPQQYQHVPPPPPCAGYHLLAAPSVPQHHPLALPAASDGGYNHEDNDMLNPSNGGIAKKRFRTKFTQEQKDKMVAFAEKLGWKIQKHDAATVEQFCAETGVKRQVLKVWMHNNKHNFGKKT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0342 251 MobiDBLite consensus disorder prediction 1 24 - -
Lal4g0342 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 52 249 - -
Lal4g0342 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 52 249 - -
Lal4g0342 251 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 188 244 IPR006455 -
Lal4g0342 251 Pfam ZF-HD protein dimerisation region 59 111 IPR006456 -
Lal4g0342 251 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Lal4g0342 251 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 110 IPR006456 -
Lal4g0342 251 Gene3D - 174 248 - -
Lal4g0342 251 SUPERFAMILY Homeodomain-like 175 249 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0342 Lal-Chr4 2296222 2296977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0342 59 247 ZF-HD Transcription Factor Family AT4G24660 51.852 1.48e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal4g0342 ZF-HD_dimer 5.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0342 - - jre:108982030 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0342 4 2296222 2296977 Lal4g0342 4 2296222 2296977 ECH
Lal17g0387 17 2590011 2590766 Lal4g0342 4 2296222 2296977 LSH
Lal21g0462 21 3293813 3294559 Lal4g0342 4 2296222 2296977 LSH
Lal22g0424 22 2761734 2762828 Lal4g0342 4 2296222 2296977 PCT
Lal4g0342 4 2296222 2296977 Lal22g0424 22 2761734 2762828 PCT