Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0336 ATGAAAGGAGAATATGTAGAACAACACCAAAAAACTGAAACACCAAACATGTTCTCAAAGCTTCACCAACCTCAACCCCAACATAACCAATTCCCTAACCACCCTTTTCAATCCTCCGTCGACGACGACAACCGAACCAGCAACACCGTCTTTAAGCCCAACTCCTCCACCGGCGACGGCGCAACCATTGAGGTCGTGCGTCGCCCTAGGGGCCGACCACCTGGTTCCAAAAACAAGCCCAGACCACCGGTGATCATAACCCGTGACCCCGAACCCGCGATGAGTCCTTACATTCTAGAAGTTTCTGGAGGAAACGATGTTGTTGAAGCCATAGCTAGGTTTAGTAGTAGGAAGAATATTGGGTTATGTGTCTTAACTGGTTCTGGAACCGTCGCTAACGTCACTCTCCGTCAACCGTTAACTACTCCTGGAGCTACCGTTACTTTTCACGGCCGTTTGGATATCCTTTCTATTTCCGCTACCTTCCTTCCACAACAGCAAGGTTCTTCAGATTCAATGGCGATGCCAAATGGTTTCTCTATCACGCTCGCCGGACCTCAGGGGCAGATCGTCGGAGGAATTGTCTCCGGAGGTTTGATCGCCGCCGGGACGGTGATCGTGATTGCAACATCGTTCAACAACCCTTCGTATCACAGGCTGTTGCCGGAGGAAGAGGGGAGGAATTCGGTGTCCGGGAGTGGGGAAGGACAGTCGCCGCCGGTGTCAGGTGGTGGAGATGGGCAGGGAGAGTCGTGTGGGATGTCTATGTACAGCTGTCATATGCCGTCTGATGTGATATGGGCTCCAACCGCTAGACCACCACCACCACCACCACCTTATTGA 843 0.5219 MKGEYVEQHQKTETPNMFSKLHQPQPQHNQFPNHPFQSSVDDDNRTSNTVFKPNSSTGDGATIEVVRRPRGRPPGSKNKPRPPVIITRDPEPAMSPYILEVSGGNDVVEAIARFSSRKNIGLCVLTGSGTVANVTLRQPLTTPGATVTFHGRLDILSISATFLPQQQGSSDSMAMPNGFSITLAGPQGQIVGGIVSGGLIAAGTVIVIATSFNNPSYHRLLPEEEGRNSVSGSGEGQSPPVSGGGDGQGESCGMSMYSCHMPSDVIWAPTARPPPPPPPY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0336 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 214 IPR005175 -
Lal4g0336 280 MobiDBLite consensus disorder prediction 1 89 - -
Lal4g0336 280 CDD DUF296 96 212 IPR005175 -
Lal4g0336 280 ProSiteProfiles PPC domain profile profile. 91 233 IPR005175 -
Lal4g0336 280 PIRSF ESCAROLA 6 270 IPR014476 GO:0003680
Lal4g0336 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 278 IPR014476 GO:0003680
Lal4g0336 280 MobiDBLite consensus disorder prediction 223 256 - -
Lal4g0336 280 Gene3D - 95 233 - -
Lal4g0336 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 228 - -
Lal4g0336 280 MobiDBLite consensus disorder prediction 10 61 - -
Lal4g0336 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 4 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0336 Lal-Chr4 2235842 2236684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0336 1 276 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 61.888 1.08e-102 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0336 - - gmx:100815772 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0336 4 2235842 2236684 Lal4g0336 4 2235842 2236684 ECH
Lal17g0375 17 2506137 2507063 Lal4g0336 4 2235842 2236684 LSH