Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0334 ATGGCTACTTCACTTTCTCTCAACCTAACTTTCTCATTTTACTACTTCTTCATCTTCCTCATTCTAATCAATTTTTCACACACCACACAACAACAAACCTCACCCCAAATAACTCCAAATGATAATAATAATACCCTACCCACAGAAAAAACATCACCACCACCACCATCTTCTTCTTCTTCTTCTTTCAAACCAGGAATATCAGTTGTTATTGGCGTTTTAACAACTATGTTTTCTGTTACCTTTCTCCTTCTACTTTACATCAAACACTGTTACACTGTCTCCAATGACAACAACAACAACACGACCAGTTATAACTCTACTACTACTTCTTCTTCTTCTTATCGCGGAGGGTTGCCACCTTTAACCGGAAGAAAAAACTCCGGCATTGACCGTTCCGTCATAGAATCGTTACCAACTTTCAGATTTGGATCATTGATGGGTCAAAAAGAAGGGTTAGATTGCGCGGTTTGTCTGACAAAGTTTGAAGGTACAGAAGTTCTTCGTTTATTACCAAAATGCAAGCACGCATTTCATGTAGAATGTGTAGATACATGGCTCGATGCACATTCAACTTGTCCTTTGTGCCGTTACCGAGTGGATCCAGAAGATATATTCTTACTCCATGATACCAAAACCTCACACCAAAATGAAGAACACGTTACTATAGACGTGGAGAAAGGAAGAAACTCATTGTCACAAATATCAGAATCATCACAAACTCGTAGAATCTCTGGAAGACATTCATGGGTTGGAGAAAGAGAAGGTGATAAGATATTGCAAACGACATCGTTTTTGAGAAGGTCGTTGGACAGTGAAACAACGAGAAGAAAGAGTGAAAACGGCGTTGGAGTTGGTCGTTTTATGCGTCAAAGAAAAGATGGAATGTTATTATTAACGGAAGAAATAAAAGAAAAGGAAAAGGAAAAGGAAAGGAGAATAGAGCAGAGGATTAATATTGTATCGCCACCGTGTATGAGATCAGAAGATGAAAGGTGGAGTGATGTGCAACCGTTGGATTTGTTATATCTGACGTCAGAGATGATAATAAGTAATGGGGGAAGAAAAATGATGACGTTGAAGAATAGAAACGATGATGATGGGAAAGGAGAAATAATAATAAATAAGAGAAGTGTGTCTGAGATAACAGGGTTGAGTAGATTCTTAAGGAACAGAGATATAAATAATAATGATGATAGTAACAGAGAAAAGGAAAGAGAGAGTGTGTGTGTGTTTCACTGTTTTGTTCTGACTAGTAAAGTACTATTGCAGGGTGCAGTTGCTGACATTGCATTTGATCATCTTACCCTACCTTTAATTAATTAG 1326 0.3778 MATSLSLNLTFSFYYFFIFLILINFSHTTQQQTSPQITPNDNNNTLPTEKTSPPPPSSSSSSFKPGISVVIGVLTTMFSVTFLLLLYIKHCYTVSNDNNNNTTSYNSTTTSSSSYRGGLPPLTGRKNSGIDRSVIESLPTFRFGSLMGQKEGLDCAVCLTKFEGTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDIFLLHDTKTSHQNEEHVTIDVEKGRNSLSQISESSQTRRISGRHSWVGEREGDKILQTTSFLRRSLDSETTRRKSENGVGVGRFMRQRKDGMLLLTEEIKEKEKEKERRIEQRINIVSPPCMRSEDERWSDVQPLDLLYLTSEMIISNGGRKMMTLKNRNDDDGKGEIIINKRSVSEITGLSRFLRNRDINNNDDSNREKERESVCVFHCFVLTSKVLLQGAVADIAFDHLTLPLIN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0334 441 MobiDBLite consensus disorder prediction 32 63 - -
Lal4g0334 441 MobiDBLite consensus disorder prediction 32 48 - -
Lal4g0334 441 CDD RING-H2_EL5_like 154 197 - -
Lal4g0334 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 403 - -
Lal4g0334 441 SUPERFAMILY RING/U-box 134 202 - -
Lal4g0334 441 PANTHER RING-H2 FINGER PROTEIN ATL43 28 403 - -
Lal4g0334 441 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Lal4g0334 441 MobiDBLite consensus disorder prediction 102 123 - -
Lal4g0334 441 MobiDBLite consensus disorder prediction 102 118 - -
Lal4g0334 441 Pfam Ring finger domain 154 197 IPR001841 -
Lal4g0334 441 Coils Coil 296 316 - -
Lal4g0334 441 SMART ring_2 155 196 IPR001841 -
Lal4g0334 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0334 Lal-Chr4 2225308 2226743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0334 60 390 C3H Transcription Factor Family AT5G05810 48.997 1.54e-79 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0334 K19041 - zju:107428696 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0374 17 2502805 2503752 Lal4g0334 4 2225308 2226743 LSH