Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0331 ATGACCTACCCGGGTTCATTTCGATTGTTTCATGACACTATGATACACAGTTATAATGGAAGTTGTAGCTTTTGTCATAAGCAAACTCGTGCTGATCGATTATGTTTTGTTACCTTCAATCATTTGCGACATAGTTTGAGGAAGCATTCTTCAGCACTCCTTTCCAGAGTAAACACACCACTTAGGCCTGTACCTTCTAGATGTGATGTTTTGTTGTGTCGGGCTTCCTTAGTACCAGCTGGAGGGTGTGAGGCCCCACTCCTGAAACTGGTTACAATTTCTTTGACAAGGGCGTATAATGCTATATCTAGGAGACCTGTGGTGCTTCAATTGATACCTGCCCTTGGTATCATTGGCTTTGCTTTCTTTGGTCTTGAGCCACTCCTACGTCTGATCAGGACCCCATTTCTCCAAGAAAGGACTGATAAAAGTTGGAAGAAAAGTACTCCACGTTACATTATGACATCTTATTTTCAACCTTTGCTGCTGTGGACCGGGTTAATGCTCATCTGCAGGGATTTAGATCCACTTGTCCTACAATCAGAAACCAGTCAAGTTATGAAGCAACGGCTGCTGGGTTTTGTAAGATCTTTGTCGACAGTGCTTACATTTGCTTATTGTTCATCAAGCTTAATTCAACAGGCACAAAAATTCTTTAAGGAGGCAAATGACTCCAGTGATGCCAAAAATATGAATATCGATTTTATTAGCAAAGCTGTATATACTGCAATATGGGTTGCTGCTGTGTCATTATTTATGGAGTCGCTAGGTTTCTCCACACAGAGATTGTTGACTGCTGGTGGTTTAGGCACAGTATTGCTTTCCCTTTCAGGTCGTGAGATATTTACGAACTTCCTTTCAAGCGTAATGATTCATGCAACTCGTCCATTTGTCGAGAATGAGCGGATTCAAACAAATATTAAAGGATATGAGGTTTCTGGTAAAGTTGAGTATGTAGGATGGTGGTCACCAACAAGAGTGAGAGGTTCGGATTGTGAAGCAGTGCATATTCCTAATCACAGGTTGAGTGTAAACGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCGCCTTGCAATCAGTCACGTGGATGTTAACAAGATTAATGGTATTGTAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACAGAAGGGTTTTTCTTGATGATATCAATCCAGAAAATCAGGCTCTTATGGTTGATAACTCATCCGTTCATTGGTTTAAAGTAGATTTTCTTCGTAGAAATTCCAATATCTTGTTTTCTTCCCCTCAATCTATATTAATATCTTGCTTTGTTAAAACTTCACATTCAGAAGAGTACCTCCGTGTTAAGGAAGCAATCCTCTTGGATCTTCTGAGAGTTATTAGTCATCACGGTGCTCGGTTAGCAACACCGATCCGCACAGTTCAGAAGATGTCCGATGATGCTGATTTAGAATTTGATCAATTTGATGATACCACTTTCACTGCAATGCCAAACCACCCAATTATTGAAGCATCTTATAAAGTTAAGCCTTCAACTCATTCAACTATTACAAATGAGAAGATAGATGCCAAGGATAAATTAAAGCCAACTGGTGAAGCCAAAACCCAGAGTATTGGTAGTAATAATTTGGTCCAGAAGACCTCGAAATCGATGAATCCGAAAAAGAAAAGAGCAGGAAGTGCAGGAAATACTAGTTTAACTTCGCCATCAAAGCAAGATGAAGCGAAATCCACAGTGTCATCATCATCAGTTAGTCCTTTGGAAAATAATATTGTTCTTAATGCCGCCTTGCTGGGTTCAAAAGGAACTCTTGCTATTGATGAAGAAAAGATTACATCTATCCCTTCAGATGCAGAATCACAAGAACTTGTTGTCAAACAGAATGGAAATGTACCTCCTAAGTAA 1929 0.3981 MTYPGSFRLFHDTMIHSYNGSCSFCHKQTRADRLCFVTFNHLRHSLRKHSSALLSRVNTPLRPVPSRCDVLLCRASLVPAGGCEAPLLKLVTISLTRAYNAISRRPVVLQLIPALGIIGFAFFGLEPLLRLIRTPFLQERTDKSWKKSTPRYIMTSYFQPLLLWTGLMLICRDLDPLVLQSETSQVMKQRLLGFVRSLSTVLTFAYCSSSLIQQAQKFFKEANDSSDAKNMNIDFISKAVYTAIWVAAVSLFMESLGFSTQRLLTAGGLGTVLLSLSGREIFTNFLSSVMIHATRPFVENERIQTNIKGYEVSGKVEYVGWWSPTRVRGSDCEAVHIPNHRLSVNVVRNLSKKSHWRIKTRLAISHVDVNKINGIVADMRKVLAKNPQVEQKKLHRRVFLDDINPENQALMVDNSSVHWFKVDFLRRNSNILFSSPQSILISCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTVQKMSDDADLEFDQFDDTTFTAMPNHPIIEASYKVKPSTHSTITNEKIDAKDKLKPTGEAKTQSIGSNNLVQKTSKSMNPKKKRAGSAGNTSLTSPSKQDEAKSTVSSSSVSPLENNIVLNAALLGSKGTLAIDEEKITSIPSDAESQELVVKQNGNVPPK 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0331 642 MobiDBLite consensus disorder prediction 624 642 - -
Lal4g0331 642 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 416 IPR045042 -
Lal4g0331 642 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 439 583 IPR045042 -
Lal4g0331 642 Pfam Mechanosensitive ion channel 238 474 IPR006685 GO:0016020|GO:0055085
Lal4g0331 642 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 416 - -
Lal4g0331 642 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 439 583 - -
Lal4g0331 642 MobiDBLite consensus disorder prediction 565 594 - -
Lal4g0331 642 Gene3D - 192 295 - -
Lal4g0331 642 SUPERFAMILY Sm-like ribonucleoproteins 281 351 IPR010920 -
Lal4g0331 642 MobiDBLite consensus disorder prediction 541 557 - -
Lal4g0331 642 MobiDBLite consensus disorder prediction 525 594 - -
Lal4g0331 642 MobiDBLite consensus disorder prediction 623 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0331 Lal-Chr4 2204792 2210988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0331 9 617 Mechanosensitive Ion Channel Family AT1G58200 48.012 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0331 K22047 - gmx:100797302 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0331 4 2204792 2210988 Lal4g0331 4 2204792 2210988 ECH