Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0330 ATGTCAAGGCTCTGCAGTACTAGTGGATTCTGTAGCTCCCATCATAATCTGTTCGGGGTCAGTCGATTACGTTTGGCCACCATAAATCTTTCACCACACTGTCGTTTGAAGCAGGACTCTTCAGCACTCCATCTTTTAAGTAGAGTGCCTACCCCAATAAGGCACGTGCCTTCCAGATGCAACGTTTTTGTCTGTCGATCTGTCCTAATACCAGGGGGATGGAGTGGGACTCCAGTCCTGCAATCTGCTTCTGTTTTTCTAACAAGGTCATATGATGCTTTACGAGGAAGCCCTGTTTTGCTTCGGTTAATCCCAGCGCTCGGTCTTATTGCCTTTACTGTCTATGGTCTTGAGCCATTCCTACGCCTCAGCAGAATTCTATTTCTTCAAGTAAGGACTGATAGTAGTTGGAAAAAAAGTAGTTCGCAATATATTATGACATCATATTTTCAGCCTTTGCTGTTGTTGTCTGGAGCAATGCTCATATGCAGGGCATTAGATCCATTAGTCCTACCATCGGAGGCCAGCCAGGTTGTGAAGCAGCGGCTACTGAATTTTGTTAGATCTTTGTCAACCGTGATTTCATTTGCTTACTGTTTATCAAGCTTAATTCAACAAGCACAAAAGTTCTTTATGGAGGCAAATAACTCCAGTGATGCAAGAACTATGGGCTTTGATTTTGCTGGGAAAGCTTTATACTCGGCTGTATGGGTTGCTGCCGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGTGGTTTGGGCACTGTATTGCTCACACTTGCAGGTCGTGAGATATTTACCAACTTTCTTTCAAGTATAATGATACATGCAACTCGGCCATTTATTTTAAATGAGTGGATTCAAACAAAGATCCAAGGATATGAAGTTTCTGGTACAATTGAGCATGTAGGATGGTGGTCACCAACTATTGTAAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTGAGTCAGAAATCTCATTGGCGCATCAAGAGTTACATTGCTATTAGTCACTTGGATCTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAAGTTTTGTCTAAGAATCCTCAAGTTGAGCAGCAAAAATTGCACAGAAGGGTTTTTCTAGAGAATGTCAATCCAGAAAATCAAGCTCTTATGATATTAATATCTTGTTTTGTGAAAACTTCACATTTTGAAGAGTATCTCTGCGTTAAGGAGGCAATGCTCTTGGATCTTCTGAGAGTTGTCAGTCATCATCGAGCCCGGCTGGCCACTCCCATCCGCACAGTTCAGAAATTTTACAGCGAGGCTGACTCAGGAAATATACCCTTTGGGGACACCATTTTCACTAGATCCAGAGCAGCATCAAATCGCTTCCTACTGATAGAACCACCATATAAAGTTAATGGTGATGATAAAGTCAAGCCTTTAACTCGTCCAACGCGTACAAATGAGGAAAAGGATGCCAAGATTGATGAAACTTTGGCATCTGATTCCAAAGGAGATGAGAGTTCTGCTGTGACATCAACCTCATCACCCGGTGTAAACTCAAATTCAGTTTCTGAAGCCCAAAGTCAGACTATAGGTTTTTATAGTTCAGTTGAGAAGACCCCCAAAACCTTGCAGCCTATAAAGGAAAGTGTAGGAGATGCAGGGAAGGGAGCTTCAGTTCCTGTATCTAAAAACCCGGCACAAAGTCCCGTGCCTGAGGTTTCTCCCATTGCTTCCCATGAGTCTAGCAGAGGAGAGACTGCTTCTGCCACCTCTTCACAGCCAAAGCAAGATGAAGACAAGTCTGTCGTTGTCGTGTCTTCACCATCAACTAGACCTTCCTTGGAAGAGAATATTCTTCTTGGTGTTGCCCTAGAAGGCTCAAAACGAACTCTTCCAATCGAGGAAAACACTCCATCTCCTATCCCTGCCGAGTCACAAGAATTCGCTGTCCAACGGAATGGGAGTGGACCTCATGCTAACAAGGATAAGAAGGATGGCCAGATATCTTCATTTCCAACTGCTAAGCAAAATGAATAA 2082 0.4284 MSRLCSTSGFCSSHHNLFGVSRLRLATINLSPHCRLKQDSSALHLLSRVPTPIRHVPSRCNVFVCRSVLIPGGWSGTPVLQSASVFLTRSYDALRGSPVLLRLIPALGLIAFTVYGLEPFLRLSRILFLQVRTDSSWKKSSSQYIMTSYFQPLLLLSGAMLICRALDPLVLPSEASQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFMEANNSSDARTMGFDFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFILNEWIQTKIQGYEVSGTIEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYIAISHLDLNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAMLLDLLRVVSHHRARLATPIRTVQKFYSEADSGNIPFGDTIFTRSRAASNRFLLIEPPYKVNGDDKVKPLTRPTRTNEEKDAKIDETLASDSKGDESSAVTSTSSPGVNSNSVSEAQSQTIGFYSSVEKTPKTLQPIKESVGDAGKGASVPVSKNPAQSPVPEVSPIASHESSRGETASATSSQPKQDEDKSVVVVSSPSTRPSLEENILLGVALEGSKRTLPIEENTPSPIPAESQEFAVQRNGSGPHANKDKKDGQISSFPTAKQNE 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0330 693 MobiDBLite consensus disorder prediction 642 693 - -
Lal4g0330 693 Pfam Mechanosensitive ion channel 230 437 IPR006685 GO:0016020|GO:0055085
Lal4g0330 693 MobiDBLite consensus disorder prediction 654 668 - -
Lal4g0330 693 MobiDBLite consensus disorder prediction 487 538 - -
Lal4g0330 693 MobiDBLite consensus disorder prediction 562 629 - -
Lal4g0330 693 MobiDBLite consensus disorder prediction 487 516 - -
Lal4g0330 693 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 3 685 - -
Lal4g0330 693 SUPERFAMILY Sm-like ribonucleoproteins 273 343 IPR010920 -
Lal4g0330 693 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 3 685 IPR045042 -
Lal4g0330 693 MobiDBLite consensus disorder prediction 576 629 - -
Lal4g0330 693 MobiDBLite consensus disorder prediction 517 538 - -
Lal4g0330 693 Gene3D - 183 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0330 Lal-Chr4 2197876 2203511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0330 3 665 Mechanosensitive Ion Channel Family AT1G58200 55.244 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0330 K22047 - gmx:100796022 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0330 4 2197876 2203511 Lal4g0330 4 2197876 2203511 ECH