Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0322 ATGTATGACCCTATCAACCAGATCGTTGCCATCGACGACAACAACGACACCTCCGCCACCATCCAATCCGCCGAACCCGTCGCCAACAACCATCACCACTCTCACATCGTTCATTACGAAAACGGTACTGGCGGCGTAATTGAAGATGTTGCAACTGATAATGGCGGTGTTTATGCTTCTGGCCCTATCAACATGCCTACTCAAGCTCTTGATGATTCTAGTCAGCTTACCCTCTCGTTTCGTGGTCAAGTTCAAGCAGTGTTGTTACTGTTGGGGGGACGTGAAGCACCTTCAAGTTCACAATGTGTGGAGGTACCGCCTCTAGATCAGAGGGGTGTACTGGAATATCCAAAATGTAGTCAATCACAACGAGCAGCCTCATTACTTAGGTTTCGTCAGAAGAAGAAAGAACGGTGCTTTGATAAGAAAGTTAGATACATTGTGCGTCAAGAAGTTGCACTCAGGATGCAACGTAGTAAGGGTCAATTTACTTCAGCTAAAAAACAAGATGGAGGTAATGGTTGGGGTGCAGACCAAGAGTCAGTGCAGGATGCTGTTCAATCAGAAACCTCATGCACACATTGTGGCATAAGTTCAAAGTCCACCCCAATGATGCGGAGAGGGCCATCTGGTCCGAGGACACTTTGCAATGCTTGTGGACTCTTTTGGGCAAATAGGGGTACTTTAAGGGACATTTCCAAGAGAAACCAGGAACACTCTCTTGCACCACCTGAGCAGGTTGGTGAGGGTAATAATAACATGGACTGTGGGACTCCTATGCCTGCACATAACAATCTTCTTACATTCACTGATGATAATAAGTCAGCAGCTATGTTATCTGATCATTGA 849 0.4617 MYDPINQIVAIDDNNDTSATIQSAEPVANNHHHSHIVHYENGTGGVIEDVATDNGGVYASGPINMPTQALDDSSQLTLSFRGQVQAVLLLLGGREAPSSSQCVEVPPLDQRGVLEYPKCSQSQRAASLLRFRQKKKERCFDKKVRYIVRQEVALRMQRSKGQFTSAKKQDGGNGWGADQESVQDAVQSETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDISKRNQEHSLAPPEQVGEGNNNMDCGTPMPAHNNLLTFTDDNKSAAMLSDH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0322 282 ProSitePatterns GATA-type zinc finger domain. 192 219 IPR000679 GO:0006355|GO:0043565
Lal4g0322 282 PANTHER GATA TRANSCRIPTION FACTOR 28 13 259 IPR045280 GO:0006355
Lal4g0322 282 Pfam CCT motif 124 166 IPR010402 GO:0005515
Lal4g0322 282 ProSiteProfiles CCT domain profile. 124 166 IPR010402 GO:0005515
Lal4g0322 282 ProSiteProfiles GATA-type zinc finger domain profile. 186 244 IPR000679 GO:0006355|GO:0043565
Lal4g0322 282 MobiDBLite consensus disorder prediction 159 181 - -
Lal4g0322 282 Gene3D - 183 241 IPR013088 GO:0006355|GO:0008270
Lal4g0322 282 SMART GATA_3 186 239 IPR000679 GO:0006355|GO:0043565
Lal4g0322 282 CDD ZnF_GATA 191 237 IPR000679 GO:0006355|GO:0043565
Lal4g0322 282 Pfam GATA zinc finger 192 228 IPR000679 GO:0006355|GO:0043565
Lal4g0322 282 PANTHER GATA TRANSCRIPTION FACTOR 25 13 259 - -
Lal4g0322 282 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0322 Lal-Chr4 2138513 2142781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0322 73 282 Tify Gene Family AT4G24470 54.667 7.75e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal4g0322 CCT 9.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0322 - - gmx:100784789 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0322 4 2138513 2142781 Lal4g0322 4 2138513 2142781 ECH
Lal21g0448 21 3139185 3143920 Lal4g0322 4 2138513 2142781 LSH