Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0317 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGAAGGAGCGGTTTGTTGAAAAAGGCGAAAGAGCTTGCGATCTTGTGCGATGCTGAAGTAGGAGTCGTGATTTTCTCCAGCACTGGCAAACTCCACGAATTCTCCAACACTAGGTGCACTTTGACCTCCTAG 201 0.5025 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVVIFSSTGKLHEFSNTRCTLTS 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0317 66 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
Lal4g0317 66 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal4g0317 66 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal4g0317 66 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal4g0317 66 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal4g0317 66 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal4g0317 66 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Lal4g0317 66 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal4g0317 66 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 62 - -
Lal4g0317 66 PANTHER TRANSCRIPTION FACTOR, MADS-BOX-RELATED 1 62 - -
Lal4g0317 66 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal4g0317 66 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0317 Lal-Chr4 2088266 2088466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0317 1 58 MADS-box Gene Family AT2G14210 89.655 5.40e-33 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal4g0317 SRF-TF 5.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0317 K09264 - han:110942431 117.472