Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0312 ATGGAGCTCTATGACCATGATTTCTTGGAGGAGTTAATGACTCTAAGAAGAGAAACATGTCACACTAATCCAAGCACAGAAGAAAATCATTTCTTATCTAATGACTATAGTTTTGATTGTTTTGATCAAAGCTCTTTACCTTTTCTCCAAAACAACACTTTTTGTGGTCAAGAATTTCCTCTAAGTTACAACAATGACTACAACACCATCAATGAAATTTATGGCTCCTTACTTGAAGAACCATCAGCACCACAGGTTCTTGATTCATATTATGGTACCCTTGATGCACCACCACTTAACACATCTCCATTTCTTGCTCAAGAAGATTTCTCATTGCCCATGATTGAAGAAGAGGATAATACATGTTTGCTTGATGAAAAGGTTCAGAATTTGGAGCTGCAAAACACTTGCAAAATGGAGACAACACAATCATCACAAGAAATGCAAGTTTTCAACATGGGATCTGGGTTAGAAAGTAAGAGTAGAGCAAAGAAGCTTCAAGGGCAACCTTCCAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGAGATTAAATGACCGTCTTTCAATGCTAAGGTCAATTGTCCCTAAGATAAGTAAGATGGACAGAACATCTATTCTTAGTGACACTATTGATTACATGAAAGAACTTCTGGATAAGATCAACAATTTGCAACAAGAAATAGAAGTAGATGCAAATATGGGAGCCATTTTCAAAGATGTAAAGCCAAATGAAATCTTGATTAGAAATTCTCCTAAGTTTGATGTAGAGAAGAGTTTGGACACCAAGATTGAAATTTGTTGTGCAGGGAAGCAAGGCTTGTTGCTTTCTACATTTAACACTCTTGAAGCATTAGGCCTAGAGATTCAACAATGTGTTATTAGTTGTTTCAATGATTTCTCAATGCAGGCTTCTTGCTCTGAGGAATTGGAGCAAAGAACAATGTTTAGTTCTGAAGATATAAAACAAGCATTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 1011 0.361 MELYDHDFLEELMTLRRETCHTNPSTEENHFLSNDYSFDCFDQSSLPFLQNNTFCGQEFPLSYNNDYNTINEIYGSLLEEPSAPQVLDSYYGTLDAPPLNTSPFLAQEDFSLPMIEEEDNTCLLDEKVQNLELQNTCKMETTQSSQEMQVFNMGSGLESKSRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILSDTIDYMKELLDKINNLQQEIEVDANMGAIFKDVKPNEILIRNSPKFDVEKSLDTKIEICCAGKQGLLLSTFNTLEALGLEIQQCVISCFNDFSMQASCSEELEQRTMFSSEDIKQALFRSAGYGGRCL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0312 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 230 IPR036638 GO:0046983
Lal4g0312 336 PANTHER DNA BINDING PROTEIN 3 336 - -
Lal4g0312 336 Gene3D - 159 232 IPR036638 GO:0046983
Lal4g0312 336 Coils Coil 207 234 - -
Lal4g0312 336 Pfam Helix-loop-helix DNA-binding domain 174 217 IPR011598 GO:0046983
Lal4g0312 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Lal4g0312 336 SMART finulus 174 223 IPR011598 GO:0046983
Lal4g0312 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0312 Lal-Chr4 2036057 2037934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0312 156 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.054 1.37e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal4g0312 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0312 - - gmx:100812578 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0312 4 2036057 2037934 Lal4g0312 4 2036057 2037934 ECH
Lal17g0356 17 2332336 2337025 Lal4g0312 4 2036057 2037934 LSH