Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0308 ATGTTCACTTCCCTGCAACTCCTTCTTCCACTTCTTCTTATCATTCTCAACCTTCTAACCACCGTCACTTCTGACGACCGTCAAATCCTCCTCAACTTCAAAAATTCACTTCACAAATCAAATTCTAAAGTCTTCGACACATGGAATGACACAAATTCTGTATGCAGCTTCACCGGAATCACATGCAACGCCGTTAATTCTGTCTCCGAGATCAACCTCTCCGATCAAAACCTCTCTGGGGTCCTTCCTTTACAATATATTTGCAATCTTCAATCTTTACAAAAACTCGAACTTGGTTTCAACTCATTATATGGTAGAGTCAGTGATGATATCAGAAACTGTGTAAATTTAAAGTTTTTGGATTTGGGTAACAATGGTTTTTCAGGAACCTTTCCTGATATATCACCACTGAACAAATTACAGTACCTTTTTGTTAATCAAAGTGGATTTTCTGGAACTTTTCCATGGCAGAGTCTTCTTAACATGACGGGTTTATTGAAGTTAAGCGTTGGAGATAACCCTTTTGATCTTACACCTTTTCCAAATGAGGTTTTGAGTTTGAAGAAGCTGAATTGGCTTTATTTAACAAACTGTAGCCTTGGAGGGAAAATACCAGTTGGAATTGGTAATCTCACTGAGCTCACTGAATTGGAGTTCTCAGAAAATTCTCTCACTGGTAAGTTACCTGCTGAGATTGGAAACCTTCAGAAACTGTGGCAGCTTGCTTTCTACAACAACTCCTTCACGGGAAAGCTTCCTATTGGTTTGAGAAATCTCACTAACCTTGAGAATTTTGATGGCTCAATGAATAATCTTGAAGGGGATTTATCTGAGTTGAGGTTCTTAAACAACCTTGTTACCTTGCAACTTTTTGAGAACAGTTTCTCTGGGGAGATTCCAATTGAATTTGGCCAGTTCAAAAAGTTGGTGAATGTTTCTTTGTATAGGAACATGTTAACTGGTCCTATTCCTGAGAAAATTGGGTCTTGGGCTGAGTTCAACTTCATTGATGTTTCAGAAAACTTATTGAATGGTTCTATTCCACCATATATGTGTAGCAAGGGAGCTATGCAGGCGTTGCTCATGCTTCAGAACAAGCTCAGTGGTGAAATTCCATCTACCTATGGAAATTGTTTGACCCTGAAACGATTCAGGGTCAACAACAATTCACTTTCTGGTGTTGTCCCTCCTAAAATTTGGGGGTTGCCTAATGCAGAAATAATTGATATTGAACTGAATCAGTTACGAGGTTCAATATCTCCGGATATTAAAAACGCGAAGACCTTAGCTCAGATTTATGCCAATAAGAATCGCTTATTTGGCGAAATACCACAAGAAATTACTGAAGCTACTTCTTTGGTGACAATTGATCTCAGTGAGAATCAATTTTCAGGTAACATCCCAGAAGGAATTGGCAACCTTAAACAACTAGGTAGCCTTCATTTACAGAACAACAAGCTATTTGGTTCAATACCAGATTCTTTAGGTTCATGTAACTCTCTTGTTGACATTGATCTTTCAAGGAATTCATTCTCACAACAAATCCCTTCATCCTTGGGTTTATTACCTTCTTTGAATTCTCTCAATTTATCGCAGAATGAACTCTCTGGTGAAATTCCAGTGAGTTTAGCGTTCCCCAGGCTAAGTCTGTTTGATCTTTCGTATAACCGGTTAACCGGTCCAATACCACAGGCTCTAATCATCGAAGCATACAATGGCAGCCTAGCTGGAAACACTGGTTTGTGCAGTGTCAACGCAATAGCCTCTTTCTTAACTTGCTCTTCAGGTTCTGGCATGTCTGAAGATGTTAGAACTCTTACCATTTGTTCCATGGTAGGTTTGGTTTTGTTTCTTTGTCTCATGGCTCTTTACCTTAAGAAGAAGAAGAAGGATGAGAAAGAGAGGTTTGGAAGAGGGCACTCTTTGAAGGAAGAATCATGGGACTTGAAATCATTCCATGTGTTAAGCTTCACTGAGGATGAGATTCTAGATTCCATCAAGCAAGAGAACCTAATAGGCCAAGGAGGTTCAGGGAATGTGTATAAAGTCACACTCTCAAATGGGAAACACCTCGCGGTTAAGCACATATGGAACACTGATTTCAGTGCAAGGAAGAATTCATGGAGTAGCACTCCAATGCTTGCAAAGCGCGGAGGACAGAATAAATCAAAGGAGTTTGATGCAGAAGTGGAAGCTTTGAGTTCAATAAGGCATATGAATGTGGTGAAACTTTATTGCAGTATCACTAGTGAGGATTCAAGCTTGTTGGTGTATGAGTATATGCCTAATGGTAGCTTGTGGGATAGGCTTCACACAAGTAACAAAATGGATCTTGATTGGGAGACGAGGTATGAGATCGCGGTTGGTGCAGCCAAAGGGTTGGAGTATCTGCATCATGGGTGTGAGAGGCCTGTGATTCATAGGGATGTCAAGTCTAGTAACATTTTGTTGGATGAATTTTTGAAGCCCAGGATTGCTGATTTTGGGTTAGCTAAGATTGTTCAAGCCAATGTTGGTAAGGATTCCACACATATCATTGCAGGAACACATGGTTACATTGCTCCTGAATATGGTTACACATACAAAGTGAATGAGAAAAGTGATGTGTATAGCTTTGGAGTAGTGTTAATGGAGCTAGTAACTGGTAAAAGGCCAATAGAGACAGAATTTGGAGAAAGCAAAGACATAGTCCATTGGGTTCATAAAAAGGCACAGAGAAAAGAGAGTTTTAGGAGTGCAGTGGAGTCCATAATTCCAGAGATGTATAAAGAAGAAGCTTGCAAAGTGTTAAGGGTATCAGTTCTTTGCACTGCTACTCTTCCAGCTTTAAGACCTTCCATGAAATCTGTGGTTCAAATGCTTGAGGATGCTGACCCATGCAAATTGGTTGGTATTGTCAATAGCAAATATGGGAGTGGAAAGAAAATAGGAGTCAATAATAATGCCTAA 2949 0.3974 MFTSLQLLLPLLLIILNLLTTVTSDDRQILLNFKNSLHKSNSKVFDTWNDTNSVCSFTGITCNAVNSVSEINLSDQNLSGVLPLQYICNLQSLQKLELGFNSLYGRVSDDIRNCVNLKFLDLGNNGFSGTFPDISPLNKLQYLFVNQSGFSGTFPWQSLLNMTGLLKLSVGDNPFDLTPFPNEVLSLKKLNWLYLTNCSLGGKIPVGIGNLTELTELEFSENSLTGKLPAEIGNLQKLWQLAFYNNSFTGKLPIGLRNLTNLENFDGSMNNLEGDLSELRFLNNLVTLQLFENSFSGEIPIEFGQFKKLVNVSLYRNMLTGPIPEKIGSWAEFNFIDVSENLLNGSIPPYMCSKGAMQALLMLQNKLSGEIPSTYGNCLTLKRFRVNNNSLSGVVPPKIWGLPNAEIIDIELNQLRGSISPDIKNAKTLAQIYANKNRLFGEIPQEITEATSLVTIDLSENQFSGNIPEGIGNLKQLGSLHLQNNKLFGSIPDSLGSCNSLVDIDLSRNSFSQQIPSSLGLLPSLNSLNLSQNELSGEIPVSLAFPRLSLFDLSYNRLTGPIPQALIIEAYNGSLAGNTGLCSVNAIASFLTCSSGSGMSEDVRTLTICSMVGLVLFLCLMALYLKKKKKDEKERFGRGHSLKEESWDLKSFHVLSFTEDEILDSIKQENLIGQGGSGNVYKVTLSNGKHLAVKHIWNTDFSARKNSWSSTPMLAKRGGQNKSKEFDAEVEALSSIRHMNVVKLYCSITSEDSSLLVYEYMPNGSLWDRLHTSNKMDLDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVGKDSTHIIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIETEFGESKDIVHWVHKKAQRKESFRSAVESIIPEMYKEEACKVLRVSVLCTATLPALRPSMKSVVQMLEDADPCKLVGIVNSKYGSGKKIGVNNNA 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0308 982 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lal4g0308 982 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 967 - -
Lal4g0308 982 SUPERFAMILY Protein kinase-like (PK-like) 657 955 IPR011009 -
Lal4g0308 982 SMART serkin_6 666 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0308 982 Gene3D Phosphorylase Kinase; domain 1 650 760 - -
Lal4g0308 982 Gene3D Transferase(Phosphotransferase) domain 1 761 963 - -
Lal4g0308 982 Gene3D Ribonuclease Inhibitor 350 589 IPR032675 -
Lal4g0308 982 Gene3D Ribonuclease Inhibitor 279 349 IPR032675 -
Lal4g0308 982 SMART LRR_typ_2 90 114 IPR003591 -
Lal4g0308 982 SMART LRR_typ_2 211 235 IPR003591 -
Lal4g0308 982 SMART LRR_typ_2 522 546 IPR003591 -
Lal4g0308 982 SMART LRR_typ_2 474 498 IPR003591 -
Lal4g0308 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Lal4g0308 982 ProSiteProfiles Protein kinase domain profile. 666 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0308 982 Gene3D Ribonuclease Inhibitor 178 278 IPR032675 -
Lal4g0308 982 Gene3D Ribonuclease Inhibitor 23 177 IPR032675 -
Lal4g0308 982 SUPERFAMILY L domain-like 270 584 - -
Lal4g0308 982 ProSitePatterns Protein kinases ATP-binding region signature. 672 705 IPR017441 GO:0005524
Lal4g0308 982 Pfam Protein kinase domain 668 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0308 982 SUPERFAMILY L domain-like 55 349 - -
Lal4g0308 982 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 4 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0308 Lal-Chr4 1996424 2000515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0308 13 969 Receptor kinase-like Gene Family AT1G09970 60.083 0.0 1135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lal4g0308 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0308 - - gmx:100779554 1459.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0308 4 1996424 2000515 Lal4g0308 4 1996424 2000515 ECH
Lal17g0345 17 2221347 2225398 Lal4g0308 4 1996424 2000515 LSH