Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0307 ATGAAACTTCCATTCATTACCATCTTTGTTATAGGAGTACTCATTATTAGTAGCATCTCACAAGTTATGAGTAGTACCAATCAGTATCAGTTTTTCTCTCTTATGAAGGAGTCTCTCTTAGGAAACTACCCTTTGGTTTGGAATGATGGAAATAAATCTGTGTGCCATTTCACTGGAGTTACATGCAACAATCAAAGTGAAGTTATCAATCTTGACCTTTCAAGTTGGTCAATTTCAGGGAAGTTCCCTTCAGATATATGCTCTTATTTGCCAAAGTTGAGGGTACTTAATCTTGGCCATACCAAGCTCAAGTTCAATACACAAAGCATACTCAATTGTACTTACTTGGAAGAGCTTAACATGAATCACATGTTCAACACAGGAACTCTTCCAGATTTCTCACCTTTGAAATCTCTTAGAATCCTTGACTTGTCCTATAATTTATTCACTGGTGAATTCCCCTTGTCAGTGTTTAACTTAACCAATCTTGAGGTGTTGAACTTCAATGAAAATGGAGGGTTCAATCTATGGCAATTACCATCTAATGTAGACAGGCTGAAAAAACTCAAGTCTATGATCTTGACAACATGCATGGTGTATGGCCAAATTCCACCAACCATAGGGAACATTACATCACTTATTGATCTTGAATTGAGTGGGAATTATCTCACAGGAAACATTCCAAGGGAGCTAGGATTGCTGAAGAACTTGCAACAGCTTGAACTTTACTATAACCAACAACTTGTTGGTAACATACCTGAGGAGTTTGGAAATCTCACTGAGCTTATAGATTTGGACATGTCAGTGAACAAATTAACTGGAAGCATACCAGCTTCAGTATGTGCACTTCCAAAGCTTCAAGTATTGCAGCTTTACAACAATAGTCTCTCAGGAGAAATCCCAGATGAGATTGAAAACTCAAAAACCTTGAGAATTTTATCTCTTTATGACAATTTCCTGAGAGGACAAGTCCCTAGTAAATTGGGACAGTTCTCAGGAATGGTGGTTCTGGACTTGTCAGAAAACAACTTGAGTGGTCCATTGCCAGCAGAAGTTTGCAAAGGAGGTAAACTACTCTACTTTCTTGTACTTGATAACATGTTTTCTGGTAAGATACCAGACAGTTATGCAAACTGCATGACACTTTTGAGGTTTAGAGTCAGTAATAATCGGTTGGCGGGCTCGGTTCCCGAGGGACTCCTTGGTCTGCCACATGTTTCAATCATTGATTTGAGTAGCAATAATTTGACTGGTCCTGTTCCTGAGATAGGTGGCAATTCTAGAAACTTGTCTGAACTGTTCCTGCAAAGGAACAAAATCTCAGGTGTCATACCTCCATCATTGTCAAGAGCTATTAACCTTGTTAAAATTGATTTCAGTTATAACCTTATTTCTGGTCAAATACCTTCTGAAATTGGAGAGCTGAAAAGGCTTAATTTGCTTATGTTACAAGGCAACAAGTTAAGTTCTTCCATCCCAAGTTCACTCTCTTTATTAGGGTCCCTCAACCTTCTTGATGTCTCTAATAATCTCTTAACTGGTAGCATCCCTGAAAGTCTCTCTATACTGCTTCCAAACTCCATAAACTTCTCAAATAATTTACTATCTGGTCCAATTCCTCCAAAGTTGATCAAAGGTGGTTTAGTGGAGAGCTTTTCAGGGAACCCTGGCCTATGTGTGCTACCAGTGTATGCTAATTCATCTTCTCAAAACTTCCCTATATGTCCACATACCTACAACAAGGGTAAGAGGATAAACACCATCTGGGTGGCTGGTGTAGGAGTGGTTTTGATCTTTATAGGAGCCGGCTTGTTCCTGAGACGCCGATGCAACAAAGAGACAGCTGTAGTGGAACATGATGAGACAATGTCTTCTTCATTATTCTCTTATGATGTGAAGAGCTTTCACATGATCACTTTTGATCAAAGAGAGATCATTGAGTCCTTAGTGGATAAGAATGTGATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGAATTGAAGAGTGGTGATGTTGTAGCAGTCAAGAGGCTGTGGAGTATAAAATCAAAGGATTCAGCTGCCGAGGATCGGTTATGTATGGACAAGGCATTGAAAGCAGAAGTTGAGACACTAGGAAGCATAAGGCACAAGAACATAGTGAAACTCTACTGTTGCTTCTCAAGTTTGGACTGCAGCTTGTTGGTTTATGAGTACATGCCTAATGGTAACCTATGGGATGCCCTACACAAAGGTTGGATCCATTTGGATTGGCCTACTAGGTATAAAATCGCGCTCGGAATTGCACAGGGTCTTTCATACCTCCACCATGATTTGCTTCTTCCTATTATCCATAGAGACATCAAGACAACTAATATCCTCTTGGATGTTGATTACCAGCCCAAGGTTGCTGATTTTGGGATTGCCAAGGTTTTGCAAGCAAGAGGAGGAGGGAAAGATTCCACAACTACTGTTATTGCAGGAACATATGGTTATTTAGCCCCAGAATATGCATATTCACCAAGACCCACCACTAAGTGTGATGTATACAGCTATGGGGTGATCTTAATGGAACTACTAACTGGAAAGAAGCCTGTTGAGTCAGAATTTGGAGAGAACAGAAACATTGTCTTCTGGGTTTCAAACAAAGTAGAAGGCAAAGAAGGAGCTAGGCCTAGTGAAGTACTTGATCAGAAATTATCAGCTTCATTCAAGGATGATATGATTAAAGTTCTAAGGATCGCGATTCGTTGCACCTACAAAGCCCCGGCTAGTAGACCAACCATGAAAGAAGTTGTTCAGCTACTGATTGAAGCAGTGCCAAGAAACTCAGATTCTTGCAAGTTATCAAACAAGACCACTAAAGAAGTATCAAATGTCACCACCACAATAAAGAAAACATTTGAATTATAA 2895 0.399 MKLPFITIFVIGVLIISSISQVMSSTNQYQFFSLMKESLLGNYPLVWNDGNKSVCHFTGVTCNNQSEVINLDLSSWSISGKFPSDICSYLPKLRVLNLGHTKLKFNTQSILNCTYLEELNMNHMFNTGTLPDFSPLKSLRILDLSYNLFTGEFPLSVFNLTNLEVLNFNENGGFNLWQLPSNVDRLKKLKSMILTTCMVYGQIPPTIGNITSLIDLELSGNYLTGNIPRELGLLKNLQQLELYYNQQLVGNIPEEFGNLTELIDLDMSVNKLTGSIPASVCALPKLQVLQLYNNSLSGEIPDEIENSKTLRILSLYDNFLRGQVPSKLGQFSGMVVLDLSENNLSGPLPAEVCKGGKLLYFLVLDNMFSGKIPDSYANCMTLLRFRVSNNRLAGSVPEGLLGLPHVSIIDLSSNNLTGPVPEIGGNSRNLSELFLQRNKISGVIPPSLSRAINLVKIDFSYNLISGQIPSEIGELKRLNLLMLQGNKLSSSIPSSLSLLGSLNLLDVSNNLLTGSIPESLSILLPNSINFSNNLLSGPIPPKLIKGGLVESFSGNPGLCVLPVYANSSSQNFPICPHTYNKGKRINTIWVAGVGVVLIFIGAGLFLRRRCNKETAVVEHDETMSSSLFSYDVKSFHMITFDQREIIESLVDKNVMGHGGSGTVYKIELKSGDVVAVKRLWSIKSKDSAAEDRLCMDKALKAEVETLGSIRHKNIVKLYCCFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRYKIALGIAQGLSYLHHDLLLPIIHRDIKTTNILLDVDYQPKVADFGIAKVLQARGGGKDSTTTVIAGTYGYLAPEYAYSPRPTTKCDVYSYGVILMELLTGKKPVESEFGENRNIVFWVSNKVEGKEGARPSEVLDQKLSASFKDDMIKVLRIAIRCTYKAPASRPTMKEVVQLLIEAVPRNSDSCKLSNKTTKEVSNVTTTIKKTFEL 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0307 964 SUPERFAMILY Protein kinase-like (PK-like) 633 930 IPR011009 -
Lal4g0307 964 SMART LRR_typ_2 331 355 IPR003591 -
Lal4g0307 964 SMART LRR_typ_2 90 113 IPR003591 -
Lal4g0307 964 SMART LRR_typ_2 499 523 IPR003591 -
Lal4g0307 964 SMART LRR_typ_2 136 160 IPR003591 -
Lal4g0307 964 SMART LRR_typ_2 283 307 IPR003591 -
Lal4g0307 964 SMART LRR_typ_2 403 426 IPR003591 -
Lal4g0307 964 SMART LRR_typ_2 475 498 IPR003591 -
Lal4g0307 964 Gene3D Transferase(Phosphotransferase) domain 1 734 958 - -
Lal4g0307 964 SMART serkin_6 649 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0307 964 Gene3D Ribonuclease Inhibitor 354 570 IPR032675 -
Lal4g0307 964 Gene3D Phosphorylase Kinase; domain 1 632 733 - -
Lal4g0307 964 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 7 942 - -
Lal4g0307 964 Gene3D Ribonuclease Inhibitor 176 246 IPR032675 -
Lal4g0307 964 ProSiteProfiles Protein kinase domain profile. 649 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0307 964 SUPERFAMILY L domain-like 371 573 - -
Lal4g0307 964 Pfam Protein kinase domain 651 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0307 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 942 - -
Lal4g0307 964 SUPERFAMILY L domain-like 43 246 - -
Lal4g0307 964 Gene3D Ribonuclease Inhibitor 247 353 IPR032675 -
Lal4g0307 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Lal4g0307 964 Gene3D Ribonuclease Inhibitor 34 175 IPR032675 -
Lal4g0307 964 SUPERFAMILY L domain-like 178 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0307 Lal-Chr4 1988080 1991620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0307 22 936 Receptor kinase-like Gene Family AT5G49660 64.929 0.0 1210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lal4g0307 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0307 - - gmx:100808284 1529.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0307 4 1988080 1991620 Lal4g0307 4 1988080 1991620 ECH
Lal17g0344 17 2212886 2216761 Lal4g0307 4 1988080 1991620 LSH