Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0288 ATGGAACTTCATGCTTTTTCACACACCACCACCTTTTCAAAACAACAATTATTCCCTTCCTCGATATCCAACAACAACATGGCTTCTTCAGACCATTTCATCGTTGAGGAATTCCTCGACTTCCCCAACGACGATGACCCTTCTCTCTTTACAGACTCCATTCCAGGTAACTCCACCCCTCTTAACAGCACCAATTCATCCAATTCTCTCTCCGCCTCTGCCCACACCACTTTCCAGCCTGAAAATGTCGCTGACACCAATTTCTCCGGTCACCTCTCCGTTCCGTATGATGACCTTGCTGAGCTTGAATGGCTTTCAAATTTTGAAGAGGAATCATTTTCCAACGAGGAATTACAGAAGCTGCAACTGATTTCTGGTATCAAAGCTGCTACTTCAAATGATGCAGCATCACAAAACTGTGAACCTCAACCTCAACCTCAACCCAACAACAACCCAAGCAACCCGGTTTTCGAATCACATGTGTCTGTTCCAGCCAAGGCCCGTAGCAAGAGGACCCGTGGGCCCCCTTGCAATTGGACTTCACGCATTCTTGTCCTCTCCCCAACAACATCATCCTCTTCCCCTCTCCCCAAGGGCCATGTCATCATCCCAGCTAAGAAGCCTGCGCCCAGGAAGAGGGAATCAGGCGATGGGGGAGAGGGCAGGAAGTGTTTGCATTGCGCCACTGATAAGACTCCTCAGTGGCGCACTGGACCAATGGGGCCAAAAACATTATGCAATGCGTGTGGCGTGAGGTACAAGTCGGGTAGGCTGGTGCCTGAATACAGGCCCGCAGCAAGCCCGACTTTTGTCCTCACGAAACACTCAAACTCGCACCGTAAGGTGATGGAGCTGCGGCGCCAGAAGGAGATGATGCAAGCCCAACATCAACACTTCATGCAACATCATCATCATCAGAACATGAGCATGATGTATGATGTCTCATCCAACGGTGATGATTACTTGATTCATCAACATGTGGGCCCTGATTTCACCCAAATGATCTAG 1008 0.4931 MELHAFSHTTTFSKQQLFPSSISNNNMASSDHFIVEEFLDFPNDDDPSLFTDSIPGNSTPLNSTNSSNSLSASAHTTFQPENVADTNFSGHLSVPYDDLAELEWLSNFEEESFSNEELQKLQLISGIKAATSNDAASQNCEPQPQPQPNNNPSNPVFESHVSVPAKARSKRTRGPPCNWTSRILVLSPTTSSSSPLPKGHVIIPAKKPAPRKRESGDGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMQAQHQHFMQHHHHQNMSMMYDVSSNGDDYLIHQHVGPDFTQMI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0288 335 MobiDBLite consensus disorder prediction 132 175 - -
Lal4g0288 335 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Lal4g0288 335 MobiDBLite consensus disorder prediction 207 221 - -
Lal4g0288 335 PANTHER GATA TRANSCRIPTION FACTOR 1 335 - -
Lal4g0288 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 282 - -
Lal4g0288 335 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Lal4g0288 335 ProSiteProfiles GATA-type zinc finger domain profile. 218 254 IPR000679 GO:0006355|GO:0043565
Lal4g0288 335 MobiDBLite consensus disorder prediction 49 74 - -
Lal4g0288 335 PIRSF Txn_fac_GATA_plant 4 314 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal4g0288 335 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Lal4g0288 335 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
Lal4g0288 335 MobiDBLite consensus disorder prediction 50 74 - -
Lal4g0288 335 MobiDBLite consensus disorder prediction 188 221 - -
Lal4g0288 335 Gene3D - 218 268 IPR013088 GO:0006355|GO:0008270
Lal4g0288 335 PANTHER GATA TRANSCRIPTION FACTOR 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0288 Lal-Chr4 1865218 1867400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0288 29 335 C2C2-Gata Transcription Factor Family AT5G25830 52.083 8.69e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal4g0288 GATA 3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0288 - - zju:107420464 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0288 4 1865218 1867400 Lal4g0288 4 1865218 1867400 ECH
Lal17g0323 17 2039763 2041171 Lal4g0288 4 1865218 1867400 LSH