Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0285 ATGAATGTTGAACCCCAAAGTTGTGAGAGTGGTAACACCTTAAACTCAAACTCAAATTCTCCTTCTTCAACAACAAAAAAAGTGAAACGAATTAGAGACTTAAACAAGTACCCTTTATACCGTGGGGTACGTATGCGTAACTGGGGAAAATGGGTCTCTGAAATTCGTGAACCACGCAAGAAATCACGCATATGGCTAGGCACATTTTCAACACCTGAAATGGCTGCAAGAGCACACGATGTTGCAGCATTAACCATCAAGGGTAGTTCCGCAATTCTCAACTTCCCTAACCTTGTTAACTCTCTTCCACGCCCTTTGTCACGTTCCCCACGTGATGTTCAAGCTGCGGCTGCAAAAGCTGCTCAAATGGACAACCTTGACATACCCAAAACAACAACAACAACGTTGTCATCAATGTCTTCTTCTTCTTCTTCTTCACTCTCTTCATTGGTTTCAGCAATGGACTTGTGTAATGATGAATTAAGTGAGATAATAGAGTTGCCGAGGTTGGAAAACAGTGTTGATGAGAAGAGAGAGTTTGTGTTCATGGAAACAACCTCGATCGATGGTTGGAATATGTATCAGCCACCTTTGTTTGAAGACTTTGAACAGCTTGGAGTCATAGAGAGTAGGTTTGAGAGTTTGACACGGATTTGA 657 0.4201 MNVEPQSCESGNTLNSNSNSPSSTTKKVKRIRDLNKYPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGSSAILNFPNLVNSLPRPLSRSPRDVQAAAAKAAQMDNLDIPKTTTTTLSSMSSSSSSSLSSLVSAMDLCNDELSEIIELPRLENSVDEKREFVFMETTSIDGWNMYQPPLFEDFEQLGVIESRFESLTRI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0285 218 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lal4g0285 218 MobiDBLite consensus disorder prediction 1 25 - -
Lal4g0285 218 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lal4g0285 218 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lal4g0285 218 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lal4g0285 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 200 - -
Lal4g0285 218 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Lal4g0285 218 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Lal4g0285 218 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Lal4g0285 218 MobiDBLite consensus disorder prediction 1 28 - -
Lal4g0285 218 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Lal4g0285 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 10 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0285 Lal-Chr4 1838483 1839139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0285 16 197 AP2-EREBP Transcription Factor Family AT5G11590 57.895 6.94e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal4g0285 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0285 K09286 - tcc:18587975 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0285 4 1838483 1839139 Lal4g0285 4 1838483 1839139 ECH
Lal17g0317 17 1987762 1988430 Lal4g0285 4 1838483 1839139 LSH