Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0280 ATGGATATGGAGAGAATCATCGGAGGAAAGTTTAAGATTGGTCGCAAAATTGGGAGCGGTTCTTTCGGTCATATTTATATTGCTTCAAATATTGATACATCAGAGATTGTGGCTGTTAAAATGGAGAGTAAGAAGGCCAAGCATCCACAACTACTGTATGAGGCCAAGCTATATAATTTTATTCAAGGAGAGCCTGGTATACCAAGTATGAAATGGTGTGGTACTGATGGAGACAACAATGTACTAGTTATTGATCTTCTGGGACCGAGCCTTGAAGACCTTTTTGTCTATTGCGGGAGGAACTTCTCACTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTTACAAGAATAGAGTACGTGCATTCAAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTAATTGGTCTTGGGAGGAGAGCAAATCAGGTTTATATTATTGATTTTGGACTTGCAAAAAGATATAAGGATCCTAACACAAACAAACATATTCCCTACAGAGAAAATAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGTAATACTCACTTAGGATTTGAGCAAAGTCGTCGTGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTAAAAGCTGTCACTAAAAAGGAAAAATACGATAAGATTTGTGAGAAAAAGTTATCAACTTCAGTTGAGATGCTTTGCACGTCATATCCCGTGGAGTTCACTTCATACTTCAATTATTGCCGCTCTTTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCAGCTTTTCCGTGATATGTTCACTCGTGAAGGATACGCCTCTGACAATTTATTTGACTGGACCATCCTAAAATATCAGCAGGCTCAACTGGCAAAGAGACAAAATCTATCATCTCCTGCATCTGCTGTGCCTAGCAGTCCAAAACCATTGGTTGTGGATAGGCAGCATAATAAAGGTGTCAATCATTCAGCTCAAACTACAGTAACAAAACAGCTATCCCATCTTGGTCGTCCAAGTGTGCATGTGCAACCTAAGCCATCTAGTTTTCAGAATCCGAATGCCAAGAATAAGACTGAAAAACATTATGTGAACAATGGTCCATCTACTTCATCTGTCATGCCCAGATCATCTACCGAAAATATCCCTATTCCACAGAAGCCCTTAGAAACCTCAAACCTGGGCCATGTATTAGATAGTAATCCCCGTGTTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCTTCAGCCGAATAG 1293 0.3998 MDMERIIGGKFKIGRKIGSGSFGHIYIASNIDTSEIVAVKMESKKAKHPQLLYEAKLYNFIQGEPGIPSMKWCGTDGDNNVLVIDLLGPSLEDLFVYCGRNFSLKTVLMLADQMLTRIEYVHSKGFLHRDIKPDNFLIGLGRRANQVYIIDFGLAKRYKDPNTNKHIPYRENKNLTGTARYASCNTHLGFEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVTKKEKYDKICEKKLSTSVEMLCTSYPVEFTSYFNYCRSLTFDQRPDYGFLKQLFRDMFTREGYASDNLFDWTILKYQQAQLAKRQNLSSPASAVPSSPKPLVVDRQHNKGVNHSAQTTVTKQLSHLGRPSVHVQPKPSSFQNPNAKNKTEKHYVNNGPSTSSVMPRSSTENIPIPQKPLETSNLGHVLDSNPRVSSSWIPSLRRISSAE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0280 430 ProSiteProfiles Protein kinase domain profile. 11 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0280 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lal4g0280 430 Pfam Protein kinase domain 12 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0280 430 SUPERFAMILY Protein kinase-like (PK-like) 6 292 IPR011009 -
Lal4g0280 430 Gene3D Transferase(Phosphotransferase) domain 1 2 346 - -
Lal4g0280 430 MobiDBLite consensus disorder prediction 341 418 - -
Lal4g0280 430 PANTHER CASEIN KINASE-RELATED 3 410 - -
Lal4g0280 430 MobiDBLite consensus disorder prediction 355 418 - -
Lal4g0280 430 PANTHER CASEIN KINASE I-LIKE PROTEIN 3 410 - -
Lal4g0280 430 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Lal4g0280 430 SMART serkin_6 11 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0280 Lal-Chr4 1814667 1819959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0280 11 230 AGC Kinase Gene Family AT3G08720 27.111 1.22e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal4g0280 Pkinase 1.2e-28 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0312 17 1953335 1968991 Lal4g0280 4 1814667 1819959 LSH