Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0274 ATGGAAAGTGACAAGAAAATCCCTTCTCCGTTGGATGGTAGTGTTCAGAAAGGCAGGGCGTTGCATGGGAGGACTACTGGCCCTACCAGGCGTTCTACGAAAGGGCAATGGACAGCAGAGGAGGATGAGATTTTGTGCAAGGCTGTAGAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCCGAGTGTTTCAAGGATAGAACTGATGTGCAATGCTTGCATCGGTGGCAGAAAGTCTTAAATCCAGAGCTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGATTTGGTGAACAAATATGGTCCTAAAAAATGGTCTAATATCGCACAACATTTACCTGGGCGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAACAAGGAAGCATGGACACAAGACGAGGAGTTGGCTCTGATACTTGCTCATGAAAAATACGGGAATAGATGGGCAGAACTAACAAAATATTTGCCTGGAAGGTCAGACAATGCTATAAAAAACCACTGGCACAGTTCTGTGAAAAAGAAATTGGATTCTTACAAGGCGTCAGGCTTGCTTGCTCGGTTACATTCTGCACCACTTATTGGTAATCCAAATCAACCCATAGCTTCAACTTCTTCAAGGTTGCAGTGTAGTGGAGATGAAAATGGTCCCAGGGGGACTGAAGCAAAGGAAGTTTCACAGTGTAACCAGGAGTCAGCTAATGCTGGTCAATTTCAATCTGCAACTGAAATGAGCAATGTTGTTTTTCAAACTAGAGAGGAATGCAGGCCAAATGAAGAATCTAGTGTAGGAAAGGATTATAGTCCTAGTGAAGCATCCTGTTCAGAACCGTATTATGTGTCTCTGGATGATGTTGAATTCAATGAGCAGAAATACTCACAAGAACCTGGAAATTTCACAAATGGGGATTGCCAGCTTAATTTATCTGCTTTAGCCAATATTTCCTCATTGGACTTTGTGAGGGAACCCTCAAGGTTGCAAAATGATTGTATAGCTCCAAGTGGAAGCCGGGACATGCTGATATCTAATGATGAATGCTGCCGATTGCTATTTCCAGAGGCAATGGGTGATGAATGCATTTCCTCTGGGGATAAAAAAGGTGTAAATATGGTTAACTTGTCTAGGTGCACTTCATTTACCTTCCAAACATCTTTACCATCTGCTGCTCCATCAGTATCTTCTGCTAGTGATGATAGGTTGTTATATACTGCTGAAGCCAATCAGTTAGTTGGATCTGAGGATCAGCAGTTTATCTGTGAGACATCTGCTCCATCAGTACCTTCTGCTGGTGAAGACAGCTTGCTGTTTACTGCCGAAACCAATCAGTTAGTTGGGTATGAGGATCAGCAGTTTGTCTCCAGAGCACAGGACAACTTCATTTTTGCCAATGACTTATCCGATGCTCCTTGTATCAATCAGATAGGTTGTTCAGAAATGCAAGAGCTATCAGATAATGTCCAGGAAACCTCAAAATTGGTCCCTGTAAATAGTTTTGGTTGTGGATCAGAAACTAAACAAACTTGCTATCCAACAGATGAAAAGCCAAACCTGGATACGAAACAGGACAACACAGGATCTCTATGCTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTTTTAAGCTGTGATCTTACACAACCTGGGTGTGATATGCAGCAAGAGTTTAGTCCCCTAGGTATCCGCCAGTTGATGATGTCTTCTATGAACTGTCTATCACCTTTCAGGTTGTGGGACTCACCTTCTCGAAATGATAGTTCAGATGCTTTGTTGAAAAGTGCTGCTAAAACTTTCACAGGTACGCCATCCATATTAAAGAAAAGACACCGAGACCTTTTATCTCCGCTATCAGATAAAAGAATCGACAAGAAACTTGAGATTGACATGACGTCAACATTGATAAAAGATTTTTCCCGTTTGGAAGTAATGTTTGATGATATTGAGACTCCGGAAGCAGTTTTTCTTTCTCCATCTTCAATCCGAAAAAAGAATTCTGGTACCTCTGTTGAAGATGATAAAGAAAATTGTGGACAAACTGTTAAAGAGGAACCAATAAAGGAGAAAAATAAATCTGCAATATTGGATGACAAAATGTCAGAACTTGGTACAGGTGACGGTATTTCTCAGGAGAAGGGTACACAGCGATTTTCTGATGTTAAGTCTGGGATGAAAAATGATGTCAATGTGACTGCTGAGATTGTGCAACAATCTTCTGGAGTTCTGGTTGAACATGATATGAATAATCCATTACTGCATTCTCCTGATCTAGTTGGATTTAAATCAGACAGTGATCCAAGTTTATCCACTAGAACTCATAAAAGTCCTTGCTCGAGCATTAAGTCTCCTTATGGACAGGAAAGACTTAGAGTTGCTATTGCTAGTTGTGTACAATCCTTCTGTTCATCAGCCCCGGGAGAGAATTCGGATGTTCATGCTGGAAAAGATGCTGGTTTTGAAACATGTAGCATATTTGGTGGAACACCTTTTAGGAGAAGTGTTGAATCACCTACGACATGGAAATCACCTTGGCTCTTCAACACTTTTCTGTCTAGCCCCAAGATTGATCCTGAAATTACTATTGAGGATTTTGGGTATTTCATGAGCCCAGGTAATAGGAGTTATGATGCAATCGAATGGATGAAACAGATTAGTCCGATTGCTCGTGAGATTTTGGAAAATGAAACTCCTAAGGCGTTACCAAAAGATGGATCTGTAAATGACCAGGACAGGGACCAGGAAAATAAGGTTCCGCATGATCAGCATGAGAACCATTGTCAGTCGGCTTCAAATGCTTTGCTAAAGGTGGAGCGACGCATACTTGACTTCAGCGAATGTGGAACACCGGGCAAAGTTGATAACAGCAAATGCTCAACTATAAGCTGTTCAAGCCCTTCTTCTTCTTCTTCTTCATATTTGTTAAAAGGATGTAGATAG 2970 0.4094 MESDKKIPSPLDGSVQKGRALHGRTTGPTRRSTKGQWTAEEDEILCKAVERFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSNIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQDEELALILAHEKYGNRWAELTKYLPGRSDNAIKNHWHSSVKKKLDSYKASGLLARLHSAPLIGNPNQPIASTSSRLQCSGDENGPRGTEAKEVSQCNQESANAGQFQSATEMSNVVFQTREECRPNEESSVGKDYSPSEASCSEPYYVSLDDVEFNEQKYSQEPGNFTNGDCQLNLSALANISSLDFVREPSRLQNDCIAPSGSRDMLISNDECCRLLFPEAMGDECISSGDKKGVNMVNLSRCTSFTFQTSLPSAAPSVSSASDDRLLYTAEANQLVGSEDQQFICETSAPSVPSAGEDSLLFTAETNQLVGYEDQQFVSRAQDNFIFANDLSDAPCINQIGCSEMQELSDNVQETSKLVPVNSFGCGSETKQTCYPTDEKPNLDTKQDNTGSLCYEPPRFPSLDIPFLSCDLTQPGCDMQQEFSPLGIRQLMMSSMNCLSPFRLWDSPSRNDSSDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIDKKLEIDMTSTLIKDFSRLEVMFDDIETPEAVFLSPSSIRKKNSGTSVEDDKENCGQTVKEEPIKEKNKSAILDDKMSELGTGDGISQEKGTQRFSDVKSGMKNDVNVTAEIVQQSSGVLVEHDMNNPLLHSPDLVGFKSDSDPSLSTRTHKSPCSSIKSPYGQERLRVAIASCVQSFCSSAPGENSDVHAGKDAGFETCSIFGGTPFRRSVESPTTWKSPWLFNTFLSSPKIDPEITIEDFGYFMSPGNRSYDAIEWMKQISPIAREILENETPKALPKDGSVNDQDRDQENKVPHDQHENHCQSASNALLKVERRILDFSECGTPGKVDNSKCSTISCSSPSSSSSSYLLKGCR 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0274 989 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 80 IPR017930 -
Lal4g0274 989 Gene3D - 86 137 - -
Lal4g0274 989 MobiDBLite consensus disorder prediction 961 989 - -
Lal4g0274 989 Pfam Myb-like DNA-binding domain 138 180 IPR001005 -
Lal4g0274 989 Pfam Myb-like DNA-binding domain 86 132 IPR001005 -
Lal4g0274 989 Pfam Myb-like DNA-binding domain 34 80 IPR001005 -
Lal4g0274 989 MobiDBLite consensus disorder prediction 915 934 - -
Lal4g0274 989 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Lal4g0274 989 Gene3D - 139 198 - -
Lal4g0274 989 MobiDBLite consensus disorder prediction 1 36 - -
Lal4g0274 989 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 187 IPR017930 -
Lal4g0274 989 MobiDBLite consensus disorder prediction 207 252 - -
Lal4g0274 989 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 136 IPR017930 -
Lal4g0274 989 MobiDBLite consensus disorder prediction 962 989 - -
Lal4g0274 989 CDD SANT 140 180 IPR001005 -
Lal4g0274 989 CDD SANT 37 80 IPR001005 -
Lal4g0274 989 MobiDBLite consensus disorder prediction 207 224 - -
Lal4g0274 989 SUPERFAMILY Homeodomain-like 35 90 IPR009057 -
Lal4g0274 989 Gene3D - 33 85 - -
Lal4g0274 989 MobiDBLite consensus disorder prediction 905 937 - -
Lal4g0274 989 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Lal4g0274 989 SUPERFAMILY Homeodomain-like 83 179 IPR009057 -
Lal4g0274 989 SMART sant 33 82 IPR001005 -
Lal4g0274 989 SMART sant 85 134 IPR001005 -
Lal4g0274 989 SMART sant 137 185 IPR001005 -
Lal4g0274 989 CDD SANT 88 132 IPR001005 -
Lal4g0274 989 PANTHER TRANSCRIPTION REPRESSOR MYB5 10 351 - -
Lal4g0274 989 PANTHER TRANSCRIPTION REPRESSOR MYB5 350 988 - -
Lal4g0274 989 PANTHER MYB PROTEIN-RELATED 10 351 - -
Lal4g0274 989 PANTHER MYB PROTEIN-RELATED 350 988 - -
Lal4g0274 989 MobiDBLite consensus disorder prediction 233 252 - -
Lal4g0274 989 ProSiteProfiles Myb-like domain profile. 81 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0274 Lal-Chr4 1757014 1765373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0274 1 963 MYB Transcription Factor Family AT4G32730 43.385 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal4g0274 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0274 - K09420 gmx:100811335 1296.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0274 4 1757014 1765373 Lal4g0274 4 1757014 1765373 ECH
Lal21g0405 21 2801484 2813229 Lal4g0274 4 1757014 1765373 LSH
Lal8g1513 8 19435167 19442813 Lal4g0274 4 1757014 1765373 PCT
Lal25g1110 25 14480383 14488224 Lal4g0274 4 1757014 1765373 PCT
Lal4g0274 4 1757014 1765373 Lal8g1513 8 19435167 19442813 PCT
Lal4g0274 4 1757014 1765373 Lal25g1110 25 14480383 14488224 PCT