Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0258 ATGGCGGTGGAGCTAATGGGTTTCCCTAAACTAGAAGAACAGAAAGCTATTGAAGAAGCAGCTTCTGAGGGCATTAAGGGAATTAAACATCTCATCAATCTCCTCTCTCATCAACCCTCTCACCTTCAAACCGATCTCACTCTTTCAAATTTCAAGAATCTTATTTCATCTCTCAACCGCACCGGCCACGCGCGTTTTCGCCGTGCTCCTCTCACCTCAACCACTCCCACTCTTCCTCCTCCTCCACCACCACCACCGCCGCACAGCCAGGTCGTGGTTCATCACGCGCCGGTCACCTTTGTTCCATCGCAATCACAGAGTTTGACTCTCGATTTTACTAAGCCTAATAACTTCTTTACCTCTAACGCTAAGTCCATGGAGCTTGAATTTTCTAAGGATACTACAACCTTCAGCGTTTCATCAACATCGTCTTTTATGTCCTCAGCTATCACCGGTGACGGAAGTGTCTCCAACGGTAAGCAAGGATCGTCGATTTTCTTGACTCCGGCGGTGCCTTCTGTTTCCGGCGTGAAACCTCCGCTGTCGTCTGCGCCGTTCAAGAAGAGGTGCCATGACCACATGGAACACTCCGGTAATGCCTCCGGCAATATCTCCGGCTCCGGCAGCAAGTGTCACTGCATCAAGAAAAGAAAAAATCGATTGAAAAAGACAGTTAGAGTTCCGGCGATTAGTTCAAGGATAGCTGATATTCCACCGGACGAGTATTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGTTCGCCATATCCGCGGGGCTATTACAAGTGTAGTACGGTGAGAGGGTGCCCAGCGAGGAAACACGTGGAGCGTGCTACAGACGATCCAGCGATGCTGATTGTTACTTACGAGGGGGAGCACCGTCACGCTATTCAAGCCGCGATGCAGGAGAATATTTCTGGGGGAATGGGTTTGATATTCGAGTCAACGTAG 954 0.5 MAVELMGFPKLEEQKAIEEAASEGIKGIKHLINLLSHQPSHLQTDLTLSNFKNLISSLNRTGHARFRRAPLTSTTPTLPPPPPPPPPHSQVVVHHAPVTFVPSQSQSLTLDFTKPNNFFTSNAKSMELEFSKDTTTFSVSSTSSFMSSAITGDGSVSNGKQGSSIFLTPAVPSVSGVKPPLSSAPFKKRCHDHMEHSGNASGNISGSGSKCHCIKKRKNRLKKTVRVPAISSRIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEGEHRHAIQAAMQENISGGMGLIFEST 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0258 317 SUPERFAMILY WRKY DNA-binding domain 236 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal4g0258 317 SMART WRKY_cls 238 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal4g0258 317 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 302 IPR044810 GO:0003700
Lal4g0258 317 Pfam Plant zinc cluster domain 187 236 IPR018872 -
Lal4g0258 317 MobiDBLite consensus disorder prediction 68 88 - -
Lal4g0258 317 ProSiteProfiles WRKY domain profile. 233 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal4g0258 317 Pfam WRKY DNA -binding domain 240 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal4g0258 317 PANTHER WRKY PROTEIN 12 302 - -
Lal4g0258 317 MobiDBLite consensus disorder prediction 74 88 - -
Lal4g0258 317 Gene3D WRKY domain 210 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0258 Lal-Chr4 1665013 1667365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0258 1 316 WRKY Transcription Factor Family AT2G24570 56.418 6.24e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal4g0258 WRKY 6.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0258 - - gmx:100127394 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0382 21 2596691 2599834 Lal4g0258 4 1665013 1667365 LSH