Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0255 ATGGGCCATGTCTTAAGAGATACTGCTAATACTAGAAATCGAAATGGTCAAGCTTGCAGCCGCCTTAACTGCAGTAGCAGAGTCAACTCTCCTAAAGGTTCTCAACTCGGTTCTTCTGAAAAAGGTAAATCTCTGAGGCGTTCGACCCAGTCCTTTTCCAATGGCAATGAAGCAAATGGAAGTTCCTCTAGAACTTTCTCAGGGACTAGTAACCCAAGAAAACCCATTCTAAGGCCTCGGAAAACGTTATCCTCTCAGTCAGAGGCAGGTTCATCTGAAACAAGGAGCGTACACGATGAACCAGAAACTTTAAGTCTTGTCCCTCCACCTGAAAAGATTCAGAGAGGGCTTCAAGCAGAAGTGGAAAATGCAGACTCTGGTTATATCATGCCGATGGAAGTAGGGAGCTCTAGTGTAGCATCTAGTACAAGATCTAAGAGGAACTTTCATCCAAAGCCCGTATTCCGTGGTCAAGAAGTTAAAGGCAATGGTCCAGCTACACATACCGGTACCAGTCGGTATGGGTTGAGGAACCTCAGATGCAATTCTATATCTGATGTCATTCCAGCTGGTGGCTGTTCATCATCTGATTCAACTCTTAATAGAAGGAAGGATATGATAAAAAAGAGAAACTGTGAAGGAGAAAGTAGTTCTAGTGCTAGAGGTAAGAACATAAGCGGCCCTTCATTTGAAGGACGGAATGCTGGTTCTAGAAATGGCATATCTATCTCTGATTCAAGAAGATCCAGAAATACTCCTCCTCACAATGACAGGCCAGGCAGCAATGCAGCATCAGTTAGGACACCAAGAATAGTGAGCGGTCAAGCCAGAGGAAGGTTTTCCAGCCAACGAAATGCTAATCCCGTGGCACCCAATGAGTCTCATTCTATGATTCCTCCTTCGCCACGTTCTGGTGATCTTAATGCTCCTGGTGTATCTCATCATTCTTCTGTGGAGGCTACTTTAAGTTGTCCAAGCTCTTACATTATGCCAGGTACTAGCAGTGATGAGTTATATGGTGTTCTCCCTGTGTCTCCTTCAGAATATGGTATCACTCGTTCCCTAATAAACCGAGAGGGATTTCGACGTCACTACAACATGGATGGTATTGCAGAGGTATTATTGGCACTTGAGAGAATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCTTATGCTGGAGTACAACTTGTCCCTTATTGGACTAAACTTCAATGATCAGCATAGAGATATGCGGCTGGACATTGATAACATGTCATACGAGGAACTATTAGCTCTGGAAGAGAGGATGGGTACTGTGAGCACGGCTCTAAACGAGGAAGCACTGTCAGAATGTCTGAAGAGAAGTTTCTATCAACCCTTAGAAGATGCATCCGGGAGTTGCAATGAGCATAAGGAGGACACCAAATGCAGCATATGCCAGGACGAATATTCGGTTGCGGATGAAGTAGGAAGTCTAAAATGCGAGCATAAGTATCATCTGGCTTGCATACAGCAATGGCTGAGGCTGAAGAACTGGTGCCCTATTTGCAAAGCACTAGTGGGACCTTCAAATTTATCATCTTCATCCCATTGA 1578 0.4423 MGHVLRDTANTRNRNGQACSRLNCSSRVNSPKGSQLGSSEKGKSLRRSTQSFSNGNEANGSSSRTFSGTSNPRKPILRPRKTLSSQSEAGSSETRSVHDEPETLSLVPPPEKIQRGLQAEVENADSGYIMPMEVGSSSVASSTRSKRNFHPKPVFRGQEVKGNGPATHTGTSRYGLRNLRCNSISDVIPAGGCSSSDSTLNRRKDMIKKRNCEGESSSSARGKNISGPSFEGRNAGSRNGISISDSRRSRNTPPHNDRPGSNAASVRTPRIVSGQARGRFSSQRNANPVAPNESHSMIPPSPRSGDLNAPGVSHHSSVEATLSCPSSYIMPGTSSDELYGVLPVSPSEYGITRSLINREGFRRHYNMDGIAEVLLALERIEQDVELTHEQILMLEYNLSLIGLNFNDQHRDMRLDIDNMSYEELLALEERMGTVSTALNEEALSECLKRSFYQPLEDASGSCNEHKEDTKCSICQDEYSVADEVGSLKCEHKYHLACIQQWLRLKNWCPICKALVGPSNLSSSSH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0255 525 Pfam Ring finger domain 470 512 IPR001841 -
Lal4g0255 525 MobiDBLite consensus disorder prediction 8 72 - -
Lal4g0255 525 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 514 IPR045191 GO:0061630
Lal4g0255 525 SUPERFAMILY RING/U-box 464 517 - -
Lal4g0255 525 MobiDBLite consensus disorder prediction 139 173 - -
Lal4g0255 525 MobiDBLite consensus disorder prediction 1 112 - -
Lal4g0255 525 SMART ring_2 471 511 IPR001841 -
Lal4g0255 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 516 IPR013083 -
Lal4g0255 525 MobiDBLite consensus disorder prediction 217 301 - -
Lal4g0255 525 MobiDBLite consensus disorder prediction 209 314 - -
Lal4g0255 525 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Lal4g0255 525 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 2 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0255 Lal-Chr4 1646651 1651072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0255 351 512 C3H Transcription Factor Family AT2G15530 41.975 1.10e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0255 - - gmx:100787213 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0274 17 1708657 1712353 Lal4g0255 4 1646651 1651072 LSH
Lal21g0377 21 2563289 2567054 Lal4g0255 4 1646651 1651072 LSH