Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0253 ATGGTTGATGCTACCACCCTTCATCACATTATAAACGACAATGTCGATCTTGAACGAATTCCAGTGGAGGAAGTGTTTGAGCAGCTGAAATGTTCCAGAGAAGGTCTAACATCAGAAGAAGGGACAAATCGAATTCAAATTTTTGGTCCAAACAAATTGGAAGAGAAAAAGGAAAGCAAAGTTTTGAAGTTCTTGGGTTTTATGTTTAATCCTTTATCATGGGTTATGGAAGTTGCTGCTATCATGGCTATTGCTTTGGCTAATGGTGGTGGAAGACCCCCTGATTGGCAAGATTTTTTGGGTATCATTATTCTCTTGATCATTAATTCTACTATAAGTTTTATTGAGGAAAATAATGCTGGAAATGCTGCTGCTGCACTCATGGCTGGTTTAGCTCCAAAAACCAAGATATTGAATCTTTGCAACTGCAAAGAGAATGTTAGGAAAATGGCTCATGCTACTATTGATAAGTTTGCTGAACGTGGACTTCGGTCTTTAGGTGTTGCTAGACAGGAAGTACCAGAGAAAACAAAAGAGAGTCCTGGTGCGCCATGGCAATTTGTTGGTCTGCTACCACTGTTTGATCCCCCAAGGCATGATAGTGCTGAAACCATCACGAGAGCTCTGAATCTTGGTGTGAATGTTAAGATGATTACTGGGGATCAACTTGCCATTGCCAAAGAAACCGGCCGAAGGCTTGGGATGGGAACAAACATGTACCCATCTTCTTCTTTGCTTGGCCAACACAACGATGCTCTTGTTTCAGCTCTTCCTGTTGACGAGTTGATTGAGAAGGCCGATGGATTTGCCGGAGTATTTCCTGAGCATAAATATGAAATTGTTAAGAAGCTACAAGACAGGAAGCATATATGTGGAATGACAGGTGATGGTGTCAATGATGCCCCTGCATTAAAGAGAGCGGATATTGGAATAGCCGTTGCCGATGCTACAGATGCTGCTAGGAGTGCTTCTGACATTGTCCTCACTGAACCTGGTCTGAGTGTCATTATTAGTGCAGTGCTGACCAGCAGGGCAATTTTCCAAAGGATGAAGAACTATACGATCTATGCTGTGTCAATCACCATTCGTATTGTGTTTGGTTTCATGTTTATTGCTTTGATCTGGAGGTTTGACTTTGCACCCTTCATGGTGTTGATTATTGCCATATTAAACGACGGTACCATTATGACAATATCCAAGGACCGAGTGAAACCATCGCCAATGCCGGACAGTTGGAAACTGAAGGAGATATTTGCTACTGGTGTTGTTCTTGGTAGTTACATGGCACTAATGACAGTTGTATTTTTCTGGCTTATGAAGGATACCGACTTCTTTTCGGACAAATTTGGCGTTAGGTCTCTGAGAAATAACCCTGAAGAAATGATGGCAGCCCTGTACCTGCAAGTCAGTATCATAAGTCAAGCACTTATTTTTGTGACTCGGTCCAGCAACTGGTCTTATGTTGAAAGACCTGGTTTTCTCCTAATGGCTGCTTTTCTGATTGCTCAACTGGTGGCTACTTTTCTAGCAGTGTATGCTAATTGGAGCTTTGCAAGAATTAAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGTTGTATAGTTTAGTGACATACTTTCCTCTTGATATACTCAAATTCGCGATCCGTTATGCTCTTAGTGGGAAGGCTTGGAATAATCTTTTGGAAAACAAGACTGCCTTCACAACCAAGAAAGACTACGGCAAAGAAGAAAGAGAAGCACAATGGGCAACTGAGCAAAGAACTCGTCATGGTCTTCAGTTACCGGAAACAGCCAACCTTTTCCATGGCAAGAATAGCTATAGGGAGCTTTCAGAGATTGCTGAACAAGCGAAAAGACGTGCTGAGTTTGCGAGGCTTAGGGAGCTTCATACTCTAAAGGGTCATGTTGAATCAGTGGTGAAGCTGAAAGGACTTGACATTGACACAATTCATCAGCATTACACTCTCTAA 1974 0.4235 MVDATTLHHIINDNVDLERIPVEEVFEQLKCSREGLTSEEGTNRIQIFGPNKLEEKKESKVLKFLGFMFNPLSWVMEVAAIMAIALANGGGRPPDWQDFLGIIILLIINSTISFIEENNAGNAAAALMAGLAPKTKILNLCNCKENVRKMAHATIDKFAERGLRSLGVARQEVPEKTKESPGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQHNDALVSALPVDELIEKADGFAGVFPEHKYEIVKKLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWRFDFAPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGSYMALMTVVFFWLMKDTDFFSDKFGVRSLRNNPEEMMAALYLQVSIISQALIFVTRSSNWSYVERPGFLLMAAFLIAQLVATFLAVYANWSFARIKGMGWGWAGVIWLYSLVTYFPLDILKFAIRYALSGKAWNNLLENKTAFTTKKDYGKEEREAQWATEQRTRHGLQLPETANLFHGKNSYRELSEIAEQAKRRAEFARLRELHTLKGHVESVVKLKGLDIDTIHQHYTL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0253 657 Coils Coil 608 628 - -
Lal4g0253 657 SUPERFAMILY HAD-like 186 340 IPR036412 -
Lal4g0253 657 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 553 IPR023298 -
Lal4g0253 657 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Lal4g0253 657 Gene3D - 606 657 - -
Lal4g0253 657 PANTHER PLASMA MEMBRANE ATPASE 6 138 - -
Lal4g0253 657 PANTHER PLASMA MEMBRANE ATPASE 136 637 - -
Lal4g0253 657 Gene3D - 294 552 - -
Lal4g0253 657 Gene3D - 67 150 - -
Lal4g0253 657 PRINTS P-type cation-transporting ATPase superfamily signature 189 200 - -
Lal4g0253 657 PRINTS P-type cation-transporting ATPase superfamily signature 211 221 - -
Lal4g0253 657 PRINTS P-type cation-transporting ATPase superfamily signature 294 313 - -
Lal4g0253 657 PRINTS P-type cation-transporting ATPase superfamily signature 317 329 - -
Lal4g0253 657 PRINTS H+-transporting ATPase (proton pump) signature 151 169 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0253 657 PRINTS H+-transporting ATPase (proton pump) signature 266 282 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0253 657 PRINTS H+-transporting ATPase (proton pump) signature 294 310 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0253 657 PRINTS H+-transporting ATPase (proton pump) signature 325 350 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0253 657 PRINTS H+-transporting ATPase (proton pump) signature 466 487 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0253 657 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 269 384 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0253 657 Gene3D - 186 256 IPR023214 -
Lal4g0253 657 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 137 200 IPR023299 GO:0000166
Lal4g0253 657 Pfam Cation transporter/ATPase, N-terminus 20 82 IPR004014 -
Lal4g0253 657 PANTHER CALCIUM-TRANSPORTING ATPASE 6 138 - -
Lal4g0253 657 PANTHER CALCIUM-TRANSPORTING ATPASE 136 637 - -
Lal4g0253 657 Pfam haloacid dehalogenase-like hydrolase 188 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0253 Lal-Chr4 1632116 1637767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0253 132 657 Primary Pumps ATPases AT2G24520 83.650 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0253 K01535 - gmx:100785442 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0270 17 1683793 1689009 Lal4g0253 4 1632116 1637767 LSH
Lal21g0375 21 2536758 2543743 Lal4g0253 4 1632116 1637767 LSH