Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0240 ATGAACGTCAAATCAACGCATTCTTCATATCGTGATCGAACTCACGAATTCGAAAACATTGCAGAGCGTTTGAAGAAATCACGTTCAGCTCCTAATTCTACCAATTCTACTATTTCCACTTCTTCTTCCAGATCCAACGAATACCGATCCGCCATCGCCATTCAATCTGAATTCAATAAAAGAGCTTCCAAGATTGGCTATGGCATTCATCAAACATCGCAGAAGCTTGCTAAACTTGCAAAGCTGGCGAAGAGAACATCGGTATTCGATGATCCGACGATGGAAATACAAGAGCTGACAGGTGTTATAAAGCAAGATATAAATGCTCTTAACTCTGCTGTTCTTGATCTTCAGTCACTCTCTAATTCTAGAAATCAGAGTGGTGATTTCTCTGCTGACACTACTACACATTCAACCACGGTTGTCGATGATCTTAAGACGCGTTTGATGAGCACTACTAAAGAGTTTAAAGATGTTCTCACCATGCGAACCGAGAACTTGAAAGTTCATGAGAATAGAAGGCAATTGTTTTCCTCCTCTGCTTCCAAAGAATCTGCAAATCCTTTTGTTCGTCAACGTCCATTAGCCACAAGGCCGGCTGCTAGTTCTTCCAATGCTCAAGCACCCCCATGGGCTAATGCTTCAGGCTCACCGTCTTCATCTCAGTTGTTTCCTAAGAAGCAGGAGGATGGGGAGAGTCAACCATTGCTGCAACAACAGCAGCAACAACAGGAGATAGTTCCGGTGCAAGATAGTTACATGCAAAGCAGAGCTGAAGCTCTTCATAATGTTGAGTCCACTATTCATGAGCTAAGCAACATCTTTAATCAACTAGCAACACTTGTTTCTCAACAAGGAGAGGTCGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCATTGTTGAAGTATCTCAACGGCATATCTTCTAACAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1032 0.4196 MNVKSTHSSYRDRTHEFENIAERLKKSRSAPNSTNSTISTSSSRSNEYRSAIAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDINALNSAVLDLQSLSNSRNQSGDFSADTTTHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSSASKESANPFVRQRPLATRPAASSSNAQAPPWANASGSPSSSQLFPKKQEDGESQPLLQQQQQQQEIVPVQDSYMQSRAEALHNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNGISSNRWLMIKIFFVLIFFLMVFLFFVA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0240 343 MobiDBLite consensus disorder prediction 195 242 - -
Lal4g0240 343 MobiDBLite consensus disorder prediction 23 46 - -
Lal4g0240 343 MobiDBLite consensus disorder prediction 173 187 - -
Lal4g0240 343 SUPERFAMILY t-snare proteins 56 306 IPR010989 GO:0016020|GO:0016192
Lal4g0240 343 PANTHER SYNTAXIN 2 342 IPR045242 -
Lal4g0240 343 ProSitePatterns Syntaxin / epimorphin family signature. 257 296 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lal4g0240 343 MobiDBLite consensus disorder prediction 197 242 - -
Lal4g0240 343 PANTHER SYNTAXIN-32-LIKE 2 342 - -
Lal4g0240 343 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 251 313 IPR000727 -
Lal4g0240 343 MobiDBLite consensus disorder prediction 26 46 - -
Lal4g0240 343 MobiDBLite consensus disorder prediction 171 190 - -
Lal4g0240 343 SMART tSNARE_6 246 313 IPR000727 -
Lal4g0240 343 Pfam SNARE domain 288 339 IPR000727 -
Lal4g0240 343 CDD SNARE_syntaxin5 254 332 - -
Lal4g0240 343 Gene3D - 52 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0240 Lal-Chr4 1517926 1521453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0240 1 343 SNARE and Associated Proteins AT3G24350 64.110 5.16e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0240 K08490 - gmx:100811494 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0256 17 1585942 1588787 Lal4g0240 4 1517926 1521453 LSH