Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0237 ATGGCGCGCCCAGTCCCAGAGCACTTGTATTCCACCACTCACCACCATATTGTAGACATTACACCACCGAGTTATGAAGCCTCCACTTCTACCTCCACTCAGGATGCTAATTTTGATGTACCTAATAATAATGCTGCTACAGCACCTGTTTCTCAGCTATCAAATGAATCGAGTTCGAGGAATTCTTCGTTATTGAGACGAGGTGATGGCAGTCGGCGTTTGAGGAGTCCATTGAATTCAGGGTTTTGGATATCTATTGAGCTGGTTGTCACAATATGCCAGATTGTTGCTTCTGTTGTTGTTTTGTCTCTGTCGAGACATGAGCATCCAAGTACCCCTTTGTTTGAGTGGATTGTCGGTTATGCTTCTGGATGCGTTGCTACCCTACCTCTACTTTATTGGCGCTATTATCATGGTAACCGCCTCCAACAGCAAGACACATCTCAATCACACCAGAGTTCTCCTAGCATTAGTGGTCCTTCAGGAAGAACACTTCGTTCTACTTCCAGAATGAATGGAGAAGGTATTCAGGTTGCTGCTGCATCCCCCAGAAGCAATCAAGCTTCATGGTTGATGAATGCAAGATTGAAGATACTTGTGGAATACATCAAAATGGCCATAAATTGCTTTTTTGCTGTATGGTTCATTGCCGGAAATATATGGATTTTTGGAGTACATTCCTCTGCCAACGAAGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTTACTTTTAGTTGTATCGGTTATGCTATGCCCTTAATTTTTTGTGCAACAATCTGCTGCTGTCTGCCTTGTATAATATCCATCCTTGGGGTTAGAGGGGATCTGATACAAACGCAAGGTGCAACCTCTGAATCCATTAATGCTTTGCCGACTTATAACTTCAAGATGAAGACAAATAATAGCAGGGATGAAAACAACTCAGTTGCTGATGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAACGTTTGGTCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCGAAGTATGAAAATAACGACCAGGTGAGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGACTGCATAGACAAGTGGTTGAAGATAAGTGCATTATGCCCTCTCTGCAAGTGTGGGGTTGGTGAGAAGGTTGCAGGATCAGTCTCTGGGGAAGGTTCTAGCCAACAACAGGGTTGA 1191 0.4349 MARPVPEHLYSTTHHHIVDITPPSYEASTSTSTQDANFDVPNNNAATAPVSQLSNESSSRNSSLLRRGDGSRRLRSPLNSGFWISIELVVTICQIVASVVVLSLSRHEHPSTPLFEWIVGYASGCVATLPLLYWRYYHGNRLQQQDTSQSHQSSPSISGPSGRTLRSTSRMNGEGIQVAAASPRSNQASWLMNARLKILVEYIKMAINCFFAVWFIAGNIWIFGVHSSANEAPNLYRLCIVFLTFSCIGYAMPLIFCATICCCLPCIISILGVRGDLIQTQGATSESINALPTYNFKMKTNNSRDENNSVADEGGIVAAGTEKERLVSGEDAVCCICLAKYENNDQVRELPCSHLFHKDCIDKWLKISALCPLCKCGVGEKVAGSVSGEGSSQQQG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0237 396 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Lal4g0237 396 MobiDBLite consensus disorder prediction 22 70 - -
Lal4g0237 396 CDD RING-H2_RNF111_like 333 376 - -
Lal4g0237 396 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 44 396 - -
Lal4g0237 396 SMART ringv_2 333 375 IPR011016 GO:0008270
Lal4g0237 396 MobiDBLite consensus disorder prediction 145 168 - -
Lal4g0237 396 SUPERFAMILY RING/U-box 326 381 - -
Lal4g0237 396 MobiDBLite consensus disorder prediction 23 65 - -
Lal4g0237 396 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 44 396 - -
Lal4g0237 396 Pfam Ring finger domain 334 375 IPR001841 -
Lal4g0237 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 383 IPR013083 -
Lal4g0237 396 SMART ring_2 334 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0237 Lal-Chr4 1485990 1491610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0237 66 385 C3H Transcription Factor Family AT1G80400 58.204 3.99e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0237 - - gmx:100775815 468.388