Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0234 ATGAACAAAGAAAACATAATTAGTGCTAAAGATGATGAGTTCCCACTCAGAGTCACTAGAGCAAGGGCTAAGATCTTGGGATCAAATCCATTGGGAGAAGGGATACCTTGCTTCCCATGTCAATCCTTTAAAAATGATCAGAAAAACAAGGTTCGAGCTAATTCCAAAAGGGTAGCTTCTGATGACATCAACAATTGTACTGTTGCCCCTGCTGGTCTTCAGCACAAGAGGAGGACAAAGCTTACGGATGTAACTAACATCTGCGGAAAAGCATATGACAAGTCTTCTAACACATCAAAGCTTCAGGCAAGAGTTCATAAGAAGAATGTCACAAAGCTAGAGTCAGGCGTCTCCATGGAAAATTTGTCATCAAAAGATGATGTTGGAGCAAAGTTAGATGAAGAATTATCCTCAAAAAGGGTGGTAGAATCACATGACAACATCACTGCAGTAACTTTTGATGATAAAGAGGCAGAAGAACAACGCATGTCCAATAGCATAATAGAAGGTGTTATAGCAGACATCACACTTTCAATGCAAGGCTCTGTGAAATCTGATGAACTCATGAGCTCTCCAAATAAAGAGATAGATATGATTTGTGAGAAACTAGCAGCCTCAGATTGCCTCGCAATTGTGGACATTGATTTGGAATTAAAGTTAAAGCATCCTCTAGTTTGGAGTTCTTACGCCCCTGATATATACAAGAAAACTCGTGTCATAGAGGTTGAAAGGAAACCACTAACCAATTACATGGAGAAATTGCAGAAAGATATCAATCCACGCATGCGGGCAATTCTGATTGACTGGCTTGTGGAGATTACTGAGGGATACAAGTTGGTTCCAGACACTCTTTACCTGACTGTGAATCTCATTGATCGCTATCTCTCTACCAGTTTGATTCAGAAAGAAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCAGCAAAATATGAAGAGAGTTGTGCTCCTAGAGTGGAAGAGTTTTGCATCATCACAGATAATACATACAAAAGAGAAGAGGTATTGAAAATGGAGATTGAGGTTCTAAACCTTTTGAACTTTAAATTATCTGTTCCCACAACTAAAACATTTCTGAGGAGATTTATCCAAGCAGCACAATCTTCTTACAATGTTCCTCGCGTTGAACTGGAATTCGTGGCAAATTATTTTGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGAAGTTTCTACCTTCCCTTATAGCTGCATCTGCTGTATTCCTTGCCAGATGGACCCTCAACCAGTCAGAACATCCATGGAATCCGACTCTTGAGCACTACACAAACTACAAAGTTTCAGAGCTTAAACCTGTTGTTCTTGCTCTGGAAAATTTGCAACGTAGTGCCAAATGCTGCCCCCTGAATGCTATACGAGAGAAATACAAACAACAGAAGTTCAATTGTGTGGCACAATTGACCCCAAAACCGTTGCTGTCCCTCTTCAAGGTTCAACTGTAA 1485 0.4034 MNKENIISAKDDEFPLRVTRARAKILGSNPLGEGIPCFPCQSFKNDQKNKVRANSKRVASDDINNCTVAPAGLQHKRRTKLTDVTNICGKAYDKSSNTSKLQARVHKKNVTKLESGVSMENLSSKDDVGAKLDEELSSKRVVESHDNITAVTFDDKEAEEQRMSNSIIEGVIADITLSMQGSVKSDELMSSPNKEIDMICEKLAASDCLAIVDIDLELKLKHPLVWSSYAPDIYKKTRVIEVERKPLTNYMEKLQKDINPRMRAILIDWLVEITEGYKLVPDTLYLTVNLIDRYLSTSLIQKERLQLLGVTCMLIAAKYEESCAPRVEEFCIITDNTYKREEVLKMEIEVLNLLNFKLSVPTTKTFLRRFIQAAQSSYNVPRVELEFVANYFAELTLVEYSFLKFLPSLIAASAVFLARWTLNQSEHPWNPTLEHYTNYKVSELKPVVLALENLQRSAKCCPLNAIREKYKQQKFNCVAQLTPKPLLSLFKVQL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0234 494 ProSitePatterns Cyclins signature. 263 294 IPR006671 -
Lal4g0234 494 PIRSF Cyclin_A_B_D_E 40 493 IPR039361 -
Lal4g0234 494 Pfam Cyclin, N-terminal domain 232 359 IPR006671 -
Lal4g0234 494 SMART Cyclin_C_2 361 484 IPR004367 -
Lal4g0234 494 Gene3D - 246 359 - -
Lal4g0234 494 SMART cyclin_7 268 352 IPR013763 -
Lal4g0234 494 SMART cyclin_7 365 453 IPR013763 -
Lal4g0234 494 PANTHER CYCLINS 55 490 IPR039361 -
Lal4g0234 494 Gene3D - 232 480 - -
Lal4g0234 494 SUPERFAMILY Cyclin-like 360 484 IPR036915 -
Lal4g0234 494 CDD CYCLIN 262 351 IPR013763 -
Lal4g0234 494 SUPERFAMILY Cyclin-like 221 358 IPR036915 -
Lal4g0234 494 CDD CYCLIN 359 451 IPR013763 -
Lal4g0234 494 Pfam Cyclin, C-terminal domain 361 483 IPR004367 -
Lal4g0234 494 PANTHER CYCLIN-A2-4 55 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0234 Lal-Chr4 1475496 1481394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0234 3 490 Core Cell Cycle Gene Families AT5G25380 49.388 1.85e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0234 K06627 - gmx:547780 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0251 17 1561795 1567756 Lal4g0234 4 1475496 1481394 LSH
Lal10g0010 10 104479 107447 Lal4g0234 4 1475496 1481394 PCT
Lal4g0234 4 1475496 1481394 Lal10g0010 10 104479 107447 PCT